Jatropha Genome Database

JcCA0045131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045131.20 + phase: 0 /partial
         (111 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035629001 assembled CDS                                        78   7e-16
GSVIVT01009909001 assembled CDS                                        63   3e-11

>GSVIVT01035629001 assembled CDS
          Length = 194

 Score = 78.2 bits (191), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 34/36 (94%), Positives = 36/36 (100%)

Query: 76  YSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
           Y+LPGQK+DPPEEREPLRIFYESLSKQIPSSEMAEF
Sbjct: 77  YTLPGQKHDPPEEREPLRIFYESLSKQIPSSEMAEF 112


>GSVIVT01009909001 assembled CDS
          Length = 223

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 30/36 (83%)

Query: 76  YSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
           Y LPGQK D PEER+PLRIFYE+L +Q+P SEMA F
Sbjct: 96  YDLPGQKRDTPEERDPLRIFYETLFEQVPGSEMAAF 131