Jatropha Genome Database

JcCA0044701.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0044701.20 - phase: 0 
         (262 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017946001 assembled CDS                                       410   e-115
GSVIVT01034151001 assembled CDS                                       251   2e-67
GSVIVT01024928001 assembled CDS                                       239   8e-64
GSVIVT01028227001 assembled CDS                                       232   1e-61

>GSVIVT01017946001 assembled CDS
          Length = 266

 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/266 (75%), Positives = 228/266 (85%), Gaps = 4/266 (1%)

Query: 1   MDCYGKT----SSPIDCLIFDLDDTLYSSKLGIAEALRKNIDDFLVEKCGFPENKASTLR 56
           MD  GK+    +SP DCL+FDLDDTLY SK GI+EA ++NI++FLV+KCGF E KAS+LR
Sbjct: 1   MDFCGKSLRDSTSPFDCLVFDLDDTLYHSKTGISEACKRNIEEFLVQKCGFGETKASSLR 60

Query: 57  VELFKTYGSSLAGLRALGYDIDADDYHSVVHGRLPYDLIKPNGQLRNILRSITQRKIIFT 116
           VELFK YGS+LAGLRALGY+IDADDYHS VHGRLPY+LIKP+ QLR++LRSI  RKII T
Sbjct: 61  VELFKNYGSTLAGLRALGYNIDADDYHSFVHGRLPYELIKPDSQLRSLLRSIALRKIILT 120

Query: 117 NSDRVHAIKVLKRLGLEDCFDQIICFETMNPNLSKSTRPDEFPVLLKPSMDAMKIALQVA 176
           NSDR HAIKVL RLGL+DCFDQIICFETMNPNL KSTR DEFPV+LKPS+DAMKIAL  A
Sbjct: 121 NSDRNHAIKVLDRLGLQDCFDQIICFETMNPNLPKSTRLDEFPVILKPSLDAMKIALDAA 180

Query: 177 NVDPRRTLFLDDNARNVAAGKAMGLRTVLVGKTVKSKEADYVLENVNKLAQVIPEILGSG 236
           NV+P RTLFLDDN RN+AAGKA+GLRTVLVGKT+K+KEADYVLE V+ LAQVIPEI   G
Sbjct: 181 NVNPPRTLFLDDNVRNIAAGKALGLRTVLVGKTMKTKEADYVLETVHNLAQVIPEIWLGG 240

Query: 237 KDSGEQRISRTRSEIDSMLATAPVGA 262
           KD  +QRI RT SE+D+ L T PVGA
Sbjct: 241 KDGEDQRIKRTGSELDATLPTTPVGA 266


>GSVIVT01034151001 assembled CDS
          Length = 405

 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/246 (48%), Positives = 172/246 (69%), Gaps = 18/246 (7%)

Query: 12  DCLIFDLDDTLYSSKLGIAEALRKNIDDFLVEKCGFPENKASTLRVELFKTYGSSLAGLR 71
           DCL+FDLDDTLY    G+A+A R NI+D++VEK G  +NK + L   L+K YG+++AGLR
Sbjct: 144 DCLLFDLDDTLYPLSSGLAKACRNNIEDYMVEKLGIEKNKIADLGNLLYKNYGTTMAGLR 203

Query: 72  ALGYDIDADDYHSVVHGRLPYDLIKPNGQLRNILRSITQRKIIFTNSDRVHAIKVLKRLG 131
           A+GYD D D+YHS VHGRLPY+ +KP+  LR++L S+  RK+IFTN+D+VHA K L RLG
Sbjct: 204 AIGYDFDYDEYHSFVHGRLPYENLKPDPVLRSLLLSLPIRKVIFTNADKVHAAKALSRLG 263

Query: 132 LEDCFDQIICFETMNPNLSKSTRPDEF------------------PVLLKPSMDAMKIAL 173
           LEDCF+ +ICFET+NP+   +   + F                  P++ KPS  A++ AL
Sbjct: 264 LEDCFEGVICFETLNPSHKSTVSTEIFDIIGHFSQPNAGTALPKTPIVCKPSEAAIERAL 323

Query: 174 QVANVDPRRTLFLDDNARNVAAGKAMGLRTVLVGKTVKSKEADYVLENVNKLAQVIPEIL 233
           ++AN++P+RTLF +D+ARN+ +GK +GL TVLVG + + K AD+ LE+++ + + +PE+ 
Sbjct: 324 RIANINPQRTLFFEDSARNIQSGKRVGLHTVLVGTSQRIKGADFALESIHNMREALPELW 383

Query: 234 GSGKDS 239
              K S
Sbjct: 384 EGDKKS 389


>GSVIVT01024928001 assembled CDS
          Length = 281

 Score =  239 bits (610), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 115/260 (44%), Positives = 172/260 (66%), Gaps = 22/260 (8%)

Query: 2   DCYG-KTSSPIDCLIFDLDDTLYSSKLGIAEALRKNIDDFLVEKCGFPENKASTLRVELF 60
           DCY    +S  DCL+FD+DDTLY    G++  + KNI +++++K G  E+K   +   L+
Sbjct: 5   DCYQYDQTSKYDCLLFDIDDTLYPLSSGLSAQITKNIQEYMLQKLGIEEDKVPEMCALLY 64

Query: 61  KTYGSSLAGLRALGYDIDADDYHSVVHGRLPYDLIKPNGQLRNILRSITQRKIIFTNSDR 120
           K YG+++AGLRA+GY+ D DD+HS VHGRLPY+L+KP+  LR++L S+  RK++FTN+D+
Sbjct: 65  KHYGTTMAGLRAIGYNFDYDDFHSFVHGRLPYELLKPDPVLRSLLLSLPIRKVVFTNADK 124

Query: 121 VHAIKVLKRLGLEDCFDQIICFETMNPN---------------------LSKSTRPDEFP 159
            HA +VL RLGLEDCF+ +ICFET+NP                      LS  +     P
Sbjct: 125 GHAARVLNRLGLEDCFEGVICFETLNPINKSSLGGSGTGSAGICDINHLLSVGSVLPRTP 184

Query: 160 VLLKPSMDAMKIALQVANVDPRRTLFLDDNARNVAAGKAMGLRTVLVGKTVKSKEADYVL 219
           ++ KP  DA + A ++A +DPR+TLF DD+ RN+  GK++GL TVLVG + K+K ADY L
Sbjct: 185 IVCKPFTDAFEEASKIAKIDPRKTLFFDDSFRNLQGGKSVGLHTVLVGSSHKTKGADYAL 244

Query: 220 ENVNKLAQVIPEILGSGKDS 239
           E+++ + + +PE+  + + S
Sbjct: 245 ESIHNIREALPELWEANEKS 264


>GSVIVT01028227001 assembled CDS
          Length = 302

 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 107/229 (46%), Positives = 164/229 (71%), Gaps = 5/229 (2%)

Query: 5   GKTSSPIDCLIFDLDDTLYSSKLGIAEALRKNIDDFLVEKCGFPENKASTLRVELFKTYG 64
           G   +  +CL+FD+DDTLY    G+  A RKNI+D++++     E++   + +EL++ YG
Sbjct: 56  GSNRAKYECLLFDMDDTLYPMSSGLNLACRKNIEDYMLQHLNIEESEVPRMCLELYREYG 115

Query: 65  SSLAGLRALGYDIDADDYHSVVHGRLPYDLIKPNGQLRNILRSITQRKIIFTNSDRVHAI 124
           +++AGL+ALGY+ D D++H+ VHGRLPY+ +KP+  LRN+L S+ QRKIIFTN+DR HA 
Sbjct: 116 TTMAGLKALGYEFDDDEFHAYVHGRLPYESLKPDPVLRNLLLSMPQRKIIFTNADREHAA 175

Query: 125 KVLKRLGLEDCFDQIICFETMNPNLSKSTRPDEFPVLLKPSMDAMKIALQVANVDPRRTL 184
           +VL RLGLE CF+ +ICFET+NP       P E+   L+ +  A++ A+++ANVDP++T+
Sbjct: 176 QVLNRLGLEGCFEGVICFETLNP----PPEPTEYNEELEGN-GAIEAAIRIANVDPKKTI 230

Query: 185 FLDDNARNVAAGKAMGLRTVLVGKTVKSKEADYVLENVNKLAQVIPEIL 233
           F DD+ARN+ +GKA GL TV+VG +V    AD+ L +++ + + +PEI 
Sbjct: 231 FFDDSARNITSGKAAGLHTVIVGSSVLVPGADHALGSIHNIKEALPEIW 279