Jatropha Genome Database

JcCA0044531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0044531.10 - phase: 0 /partial
         (184 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020703001 assembled CDS                                       194   2e-50
GSVIVT01020702001 assembled CDS                                       184   2e-47
GSVIVT01003195001 assembled CDS                                       107   2e-24
GSVIVT01003197001 assembled CDS                                       106   7e-24

>GSVIVT01020703001 assembled CDS
          Length = 393

 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/185 (54%), Positives = 125/185 (67%), Gaps = 10/185 (5%)

Query: 1   IFIEAARRMGVDAAKCLVIEDSLXXXXXXXXXXXXXXXXPSQSEADCSLLADSVLHSLLE 60
           +F+EAA+RMGVDAA CLVIEDSL                PSQS+AD + +ADSVLHSLLE
Sbjct: 184 LFLEAAKRMGVDAAHCLVIEDSLVGVRAANAAGMKVAAVPSQSKADYASIADSVLHSLLE 243

Query: 61  FQPEIWGLPPFDDWVDSALPIEPIYLSILYKNGSISEVTGTMAGGGES-GLPCQVSGLYF 119
           FQPE+W LPPF+DWVDSALPIEPIY S L+ NG + E     A   ES   P QV GLYF
Sbjct: 244 FQPELWDLPPFEDWVDSALPIEPIYASGLFSNGFLCE-----AEDDESCTFPSQVRGLYF 298

Query: 120 GWTQSGVHGILKVLVGIGGDHCSCSAKRNIMFLQQICTIDEKNDDVCDEQMQLVLVGYIR 179
           GW +  + GI KVLVG+G  HC+C+AKR I    ++  ID+ +  + D+ MQL LVG+IR
Sbjct: 299 GWAKLNMDGIFKVLVGVGRGHCTCTAKRKI----KLWIIDDSDGHIADQHMQLSLVGFIR 354

Query: 180 KLDSK 184
            L+ +
Sbjct: 355 GLNKE 359


>GSVIVT01020702001 assembled CDS
          Length = 369

 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/184 (51%), Positives = 114/184 (61%), Gaps = 8/184 (4%)

Query: 1   IFIEAARRMGVDAAKCLVIEDSLXXXXXXXXXXXXXXXXPSQSEADCSLLADSVLHSLLE 60
           +F+EAA+RM VDAA CLVIEDSL                P  SEAD +  ADSVLHSLLE
Sbjct: 159 LFLEAAKRMVVDAAHCLVIEDSLVGVRAANAAGMKVVAVPPHSEADYASFADSVLHSLLE 218

Query: 61  FQPEIWGLPPFDDWVDSALPIEPIYLSILYKNGSISEVTGTMAGGGESGLPCQVSGLYFG 120
           FQPE+W LPPF+DWV S LPIEPIY S L+ NG   E          SG P QV GLYFG
Sbjct: 219 FQPELWDLPPFEDWVGSTLPIEPIYASGLFSNGFFCEAEDDEP----SGFPDQVWGLYFG 274

Query: 121 WTQSGVHGILKVLVGIGGDHCSCSAKRNIMFLQQICTIDEKNDDVCDEQMQLVLVGYIRK 180
           W +   H + KVLVG+G  HC+C+AKR I    +   ID+  D + D+ M L LVG+IR 
Sbjct: 275 WAKLNTHEVFKVLVGVGRGHCTCTAKRKI----KPWIIDDGKDHIADQHMHLSLVGFIRG 330

Query: 181 LDSK 184
           L++ 
Sbjct: 331 LNNN 334


>GSVIVT01003195001 assembled CDS
          Length = 388

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 12/187 (6%)

Query: 1   IFIEAARRMGVDAAKCLVIEDSLXXXXXXXXXXXXXXXXPS-QSEADCSLLADSVLHSLL 59
           IF EA++R+ V  + CLVIEDSL                PS  +++     AD V++SLL
Sbjct: 155 IFFEASKRLSVKPSNCLVIEDSLPGVMAGKAAGMEVVAVPSIPNQSHIFNSADEVINSLL 214

Query: 60  EFQPEIWGLPPFDDWVDSALPIEPIYL--SILYKNGSISEVTGTMAG-----GGESGLPC 112
           + +PE+WGLP F DWV+  LP+EP Y+   ++   G  S+V G         G  + L  
Sbjct: 215 DLRPELWGLPSFQDWVEDTLPVEPWYIGGPVIKGFGRGSKVLGVPTANLSTEGYSTLLSE 274

Query: 113 QVSGLYFGWTQSGVHGILKVLVGIGGDHCSCSAKRNIMFLQQICTIDEKNDDVCDEQMQL 172
           Q SG+YFGW      G+ K+++ IG +    + ++ I    +   + E ++D   E++ L
Sbjct: 275 QSSGVYFGWAGLSKQGVYKMVMSIGWNPYFNNTEKTI----EPWLLHEFDEDFYGEELHL 330

Query: 173 VLVGYIR 179
           V+VGYIR
Sbjct: 331 VIVGYIR 337


>GSVIVT01003197001 assembled CDS
          Length = 388

 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 12/187 (6%)

Query: 1   IFIEAARRMGVDAAKCLVIEDSLXXXXXXXXXXXXXXXXPS-QSEADCSLLADSVLHSLL 59
           IF+EA++R+ V  + CLVIEDSL                PS   ++     AD V++SLL
Sbjct: 155 IFLEASKRLSVKPSNCLVIEDSLPGVMAGKAAGMEVVAVPSIPKQSHIFNSADEVINSLL 214

Query: 60  EFQPEIWGLPPFDDWVDSALPIEPIYL--SILYKNGSISEVTGTMAG-----GGESGLPC 112
           + +PE WGLP F DWV+  LP+EP Y+   ++   G  S+V G         G  + L  
Sbjct: 215 DLRPEQWGLPSFQDWVEDTLPVEPWYIGGPVIKGFGRGSKVLGVPTANLSTEGYSTLLSE 274

Query: 113 QVSGLYFGWTQSGVHGILKVLVGIGGDHCSCSAKRNIMFLQQICTIDEKNDDVCDEQMQL 172
           Q SG+YFGW      G+ K+++ IG +    + ++ I    +   + E ++D   E++ L
Sbjct: 275 QSSGVYFGWAGLSKQGVYKMVMSIGWNPYFNNTEKTI----EPWLLHEFDEDFYGEELHL 330

Query: 173 VLVGYIR 179
           V+VGYIR
Sbjct: 331 VIVGYIR 337