Jatropha Genome Database

JcCA0044211.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0044211.20 - phase: 0 /pseudo/partial
         (99 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017394001 assembled CDS                                       110   2e-25
GSVIVT01017422001 assembled CDS                                       109   2e-25

>GSVIVT01017394001 assembled CDS
          Length = 117

 Score =  110 bits (274), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 63/83 (75%)

Query: 17  LQADLLGNAVVRPADIETTXXXXXXXXXXXIGVWKEEEIFATGEKVKTATTFHPNLHEQQ 76
           +QADLLGN VVRPADIETT           +G+W E+EIF +GEKVK ATTF+P L E++
Sbjct: 35  IQADLLGNPVVRPADIETTALGAAYAAGLAVGIWTEDEIFDSGEKVKLATTFYPALDEER 94

Query: 77  RKKKVESWCKAVEKSFGLADLSI 99
           R KKVESWCKAV ++F LADLS+
Sbjct: 95  RNKKVESWCKAVSRTFDLADLSL 117


>GSVIVT01017422001 assembled CDS
          Length = 522

 Score =  109 bits (273), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 63/83 (75%)

Query: 17  LQADLLGNAVVRPADIETTXXXXXXXXXXXIGVWKEEEIFATGEKVKTATTFHPNLHEQQ 76
           +QADLLGN VVRPADIETT           +G+W E+EIF +GEKVK ATTF+P L E++
Sbjct: 440 IQADLLGNPVVRPADIETTALGAAYAAGLAVGIWTEDEIFDSGEKVKLATTFYPALDEER 499

Query: 77  RKKKVESWCKAVEKSFGLADLSI 99
           R KKVESWCKAV ++F LADLS+
Sbjct: 500 RNKKVESWCKAVSRTFDLADLSL 522