Jatropha Genome Database

JcCA0043881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0043881.10 + phase: 0 
         (314 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034017001 assembled CDS                                       537   e-153
GSVIVT01026852001 assembled CDS                                       446   e-126

>GSVIVT01034017001 assembled CDS
          Length = 582

 Score =  537 bits (1383), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/314 (81%), Positives = 276/314 (87%), Gaps = 1/314 (0%)

Query: 1   MASISHSPSAFRGTS-ASDLLRSSSNGVSGIPLRTLGRARFSSKTKDFAVIAKIRKVKKQ 59
           MASISHS  AF GTS ASDLLRSSSNG SG+PL+ LGRARF ++ ++F V AKI K KK 
Sbjct: 75  MASISHSSVAFSGTSMASDLLRSSSNGASGVPLKALGRARFGTRRRNFTVSAKIGKAKKH 134

Query: 60  EYPWPDNPDPNVAGGVLSHLSPFKPLKEKPKPVTLDFEKPLIGLEKKIIDVRKMANETGL 119
           +YPWP +PDPNV GGVL+HLS FKPLKEKPK VTLDFEKPL+ L+KKI+DV++MANETGL
Sbjct: 135 DYPWPADPDPNVKGGVLTHLSYFKPLKEKPKQVTLDFEKPLLDLQKKIVDVQRMANETGL 194

Query: 120 DFTDQIISLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFSITDKFVELHGDRA 179
           DF+DQIISLENKYQQALKDLYTHLTPIQRV IARHPNRPTFLDHVF+ITDKFVELHGDRA
Sbjct: 195 DFSDQIISLENKYQQALKDLYTHLTPIQRVGIARHPNRPTFLDHVFNITDKFVELHGDRA 254

Query: 180 GYDDPAIVTGIGTIDGRRYMFMGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHG 239
           GY+DPAIVTGIGTIDGRRYMFMGHQKGRNTKEN+ RNFGMPTPHGYRKALRMMYYADHHG
Sbjct: 255 GYNDPAIVTGIGTIDGRRYMFMGHQKGRNTKENVQRNFGMPTPHGYRKALRMMYYADHHG 314

Query: 240 FPIVTFIDTPGAFADLKSEELGQGEAIAHNLRTMFGLKVPXXXXXXXXXXXXXXXXXXCA 299
           FPI+TFIDTPGA+ADLKSEELGQGEAIAHNLRTMFGLKVP                  CA
Sbjct: 315 FPIITFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCA 374

Query: 300 NKLLMLENAVFYVA 313
           NKLLMLENAVFYVA
Sbjct: 375 NKLLMLENAVFYVA 388


>GSVIVT01026852001 assembled CDS
          Length = 736

 Score =  446 bits (1146), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/300 (71%), Positives = 243/300 (81%), Gaps = 3/300 (1%)

Query: 16  ASDLLRSSSNGVSGIPLRTLGRARFSSKTKDFAVIAKIRKVKKQEYPWPDNPDPNVAGGV 75
           A  LL  S   ++G+ L+ LG  R  S+ + F V+AKIRK KK +YPWPD+ DPN++ G 
Sbjct: 36  AGGLLIGSVRRLNGVWLKNLGSPRIESRNR-FHVVAKIRKGKKHDYPWPDDIDPNLSSGH 94

Query: 76  LSHLSPFKPLKEKPKPVTLDFEKPLIGLEKKIIDVRKMANETGLDFTDQIISLENKYQQA 135
           LS+LS FKPLKEKPKPVTL FEKPL+ LEKKI++VR+MA+ETGLDF+DQI SLE+KYQQA
Sbjct: 95  LSYLSYFKPLKEKPKPVTLAFEKPLVDLEKKIVEVRRMADETGLDFSDQISSLESKYQQA 154

Query: 136 LKDLYTHLTPIQRVNIARHPNRPTFLDHVFSITDK--FVELHGDRAGYDDPAIVTGIGTI 193
           LKDLY HLTPIQR+ IARHPNRPT LDH+ +ITDK  +VELHGDRAGYDDPAIVTGIG+I
Sbjct: 155 LKDLYAHLTPIQRLTIARHPNRPTVLDHILNITDKDKWVELHGDRAGYDDPAIVTGIGSI 214

Query: 194 DGRRYMFMGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAFA 253
           DG+ +MF+GHQKGRNTKENI RNF MPTPHGYRKALRMM YADHHGFPI+TFIDTPGAFA
Sbjct: 215 DGKSFMFIGHQKGRNTKENIERNFAMPTPHGYRKALRMMKYADHHGFPIITFIDTPGAFA 274

Query: 254 DLKSEELGQGEAIAHNLRTMFGLKVPXXXXXXXXXXXXXXXXXXCANKLLMLENAVFYVA 313
           DLKSEELGQGEAIA NLRTMF LKVP                  CANKL MLEN+ FYVA
Sbjct: 275 DLKSEELGQGEAIAQNLRTMFSLKVPIISVVTGEGGSGGALAIGCANKLFMLENSAFYVA 334