Jatropha Genome Database

JcCA0043431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0043431.10 + phase: 0 
         (265 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025127001 assembled CDS                                       419   e-118
GSVIVT01037941001 assembled CDS                                       108   2e-24
GSVIVT01021828001 assembled CDS                                       100   6e-22

>GSVIVT01025127001 assembled CDS
          Length = 322

 Score =  419 bits (1078), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/275 (78%), Positives = 235/275 (85%), Gaps = 18/275 (6%)

Query: 1   MAIPYPHL------SMETGL------SPLSPYPVILTQDELKKIAAYKAVEHVESGMVIG 48
           MAI YPH       +METG+      S  S  PVILTQDELKKIAAYKAVE+VESGMV+G
Sbjct: 19  MAIAYPHFIGSQKSAMETGMISSPSSSSPSRPPVILTQDELKKIAAYKAVEYVESGMVLG 78

Query: 49  LGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQALSVGIPLSDLDSYPIIDLAID 108
           LGTGSTAKHAVDRIGELLRQGKLKNI+GIPTSK THEQA+S+GIPLSDLDSYPI+DLAID
Sbjct: 79  LGTGSTAKHAVDRIGELLRQGKLKNIVGIPTSKMTHEQAVSLGIPLSDLDSYPILDLAID 138

Query: 109 GADEVDPNLNLVKGRGGSLLREKMIEGACKKFIVIVDESKLVKYVGGSGLAMPVEIVPFC 168
           GADEVDP LNLVKGRGGSLLREKM+EGACKKF+VIVDESKLV Y+GGSGLAMPVEIVPFC
Sbjct: 139 GADEVDPYLNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVNYLGGSGLAMPVEIVPFC 198

Query: 169 WKFTAKRLQELFGYAGCVAKLRTNGSNGKENGGEPFVTDNGNYIVDLYLKGNMGDLKAAS 228
           WKFTA+RLQ LF  +GCVAKLRT         GEPFVTDN NYIVDLY K  +GDLK AS
Sbjct: 199 WKFTAQRLQMLFEESGCVAKLRTY------QNGEPFVTDNMNYIVDLYFKREIGDLKVAS 252

Query: 229 DAILRLAGVVEHGMFINMATTVVVAGELGVTIKNK 263
           DAILRLAGVVEHGMFI+MATT++VAGE GV +K+K
Sbjct: 253 DAILRLAGVVEHGMFIDMATTLIVAGECGVIVKDK 287


>GSVIVT01037941001 assembled CDS
          Length = 294

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 135/288 (46%), Gaps = 28/288 (9%)

Query: 2   AIPYPHLSMETGLSPLS------------PYPVIL------TQDELKKIAAYKAVEHVES 43
           AIP+ HL++   LS  S             +P +           L + A +    +++S
Sbjct: 5   AIPFSHLNLHLPLSRASLARADCLATTRCRFPSVTRSCLADASSALLQAAKHTVDTYIKS 64

Query: 44  GMVIGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQALSVGIPLSDLDSYPII 103
           GMVIGLG+G  +  A+  +G  LR G LK+I GIP S  +  +A  VGIPL        I
Sbjct: 65  GMVIGLGSGHASDMAIQYLGRQLRTGALKDITGIPMSVASASEAAKVGIPLGHYQDCSQI 124

Query: 104 DLAIDGADEVDP-NLNLVKGR-----GGSLLREKMIEGACKKFIVIVDESKLVKYVGGSG 157
           D A D AD ++   L  + GR       S+++EK I  A  K + I+ E +    + G  
Sbjct: 125 DFAFDDADVIEEGTLVAIIGRRRLQGNESIIQEKSILKAADKLVFIIQEKQYKCDLEG-- 182

Query: 158 LAMPVEIVPFCWKFTAKRLQELFGYAGCVAKLRTNGSNGKENGGEPFVTDNGNYIVDLYL 217
             +PV +    W  TA+ + +LF     V +  + G  G   G  P VT  G+ I+D+  
Sbjct: 183 -LIPVLVQSLNWMETAEEIDDLFLGDAEVWRRPSIGHAGPLGGDFPLVTSEGHNILDVIF 241

Query: 218 KGNMGDLKAASDAILRLAGVVEHGMFINMATTVVVAGELGV-TIKNKQ 264
              +  L   ++++ ++ GVVEHG+   +    V+  + G+ T+ N Q
Sbjct: 242 TSPILKLAEVAESLDKIDGVVEHGVISKIPCIAVITSDSGMYTVDNLQ 289


>GSVIVT01021828001 assembled CDS
          Length = 198

 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 63/73 (86%)

Query: 24  LTQDELKKIAAYKAVEHVESGMVIGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKT 83
           LTQD+LKK+AA KAV++V+SGMV+GLGTGSTA   V ++G LL+ G+L +I+G+PTSK+T
Sbjct: 79  LTQDDLKKLAADKAVDYVKSGMVLGLGTGSTAAFVVAKLGHLLKTGQLSDIVGVPTSKRT 138

Query: 84  HEQALSVGIPLSD 96
            EQALS+GIPLS 
Sbjct: 139 EEQALSLGIPLSQ 151