Jatropha Genome Database

JcCA0043061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0043061.10 - phase: 0 /partial
         (339 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007910001 assembled CDS                                       348   2e-96
GSVIVT01011507001 assembled CDS                                       318   2e-87
GSVIVT01012198001 assembled CDS                                       307   4e-84

>GSVIVT01007910001 assembled CDS
          Length = 330

 Score =  348 bits (893), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 194/339 (57%), Positives = 207/339 (61%), Gaps = 128/339 (37%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISQHRINAWNSDQLPIYEPGLDDVVKR 60
           MVKICCIGAGY                                                +
Sbjct: 1   MVKICCIGAGY------------------------------------------------Q 12

Query: 61  CRGRNLFFSVDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSN 120
           CRGRNLFFS +VEKH+SEADI+FVSVNTPTKTRGLGAGKAADLTYWESAARMIADV    
Sbjct: 13  CRGRNLFFSTNVEKHISEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADV---- 68

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAISDLFNPDRVLIGGRE 180
                                    KGI +QILSNPEFLAE                   
Sbjct: 69  -------------------------KGISYQILSNPEFLAE------------------- 84

Query: 181 TPEGQEAIKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
                                           ELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 85  --------------------------------ELSKLAANAFLAQRISSVNAMSALCEAT 112

Query: 241 GADVTEVSYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPDVAEYWKQVI 300
           GADV+EVS+A+GKD+RIGPKFLNASVGFGGSCFQKDILNL+YICECNGLP+VA YWKQVI
Sbjct: 113 GADVSEVSHAIGKDSRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEVANYWKQVI 172

Query: 301 KINDYQKNRFVNRVVSSMFNTVSNKKIAILGFAFKKDTG 339
           K+NDYQKNRFVNRVV+SMFNTVS KKIAILGFAFKKDTG
Sbjct: 173 KVNDYQKNRFVNRVVASMFNTVSGKKIAILGFAFKKDTG 211


>GSVIVT01011507001 assembled CDS
          Length = 280

 Score =  318 bits (815), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/266 (65%), Positives = 181/266 (68%), Gaps = 78/266 (29%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISQHRINAWNSDQLPIYEPGLDDVVKR 60
           MVKICCIGAGY                                                +
Sbjct: 1   MVKICCIGAGY------------------------------------------------Q 12

Query: 61  CRGRNLFFSVDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSN 120
           CRG+NLFFS DVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS+
Sbjct: 13  CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 72

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAISDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNSKGIK                              E
Sbjct: 73  KIVVEKSTVPVKTAEAIEKILTHNSKGIK------------------------------E 102

Query: 181 TPEGQEAIKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQ+AI+ALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 103 TPEGQKAIQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 162

Query: 241 GADVTEVSYAVGKDTRIGPKFLNASV 266
           GADVT+VSYAVG DTRIGP   +  V
Sbjct: 163 GADVTQVSYAVGTDTRIGPNIYDPQV 188


>GSVIVT01012198001 assembled CDS
          Length = 303

 Score =  307 bits (787), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 163/228 (71%), Positives = 169/228 (74%), Gaps = 53/228 (23%)

Query: 112 MIADVSKSNKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAISDLFNP 171
           MIADVSKS+KI                             ILSNPEFLAEGTAI DL   
Sbjct: 1   MIADVSKSDKI-----------------------------ILSNPEFLAEGTAIQDL--- 28

Query: 172 DRVLIGGRETPEGQEAIKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231
                                DVYAHWVP +RI+ TNLWSAELSKLAANAFLAQRISSVN
Sbjct: 29  ---------------------DVYAHWVPVERIICTNLWSAELSKLAANAFLAQRISSVN 67

Query: 232 AMSALCEATGADVTEVSYAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPD 291
           AMSALCEATGADVTEVS+AVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP+
Sbjct: 68  AMSALCEATGADVTEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPE 127

Query: 292 VAEYWKQVIKINDYQKNRFVNRVVSSMFNTVSNKKIAILGFAFKKDTG 339
           VA YWKQVIK+NDYQK RFVNRVVSSMFNTVS KKIAILGFAFKKDTG
Sbjct: 128 VANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTG 175