Jatropha Genome Database

JcCA0042831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0042831.10 - phase: 0 /pseudo
         (342 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018810001 assembled CDS                                       356   8e-99
GSVIVT01024163001 assembled CDS                                       353   6e-98

>GSVIVT01018810001 assembled CDS
          Length = 336

 Score =  356 bits (914), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 179/283 (63%), Positives = 210/283 (74%), Gaps = 4/283 (1%)

Query: 1   MDIRLDWLLRAAWISATLPILIASFPSSRLNSFHQLLLGFSRRGKTMQPSSH-FTVPQRF 59
           M++ L WLLRAAWI+ TLPIL+AS PSSRL+  H +L GF+ RGKT+Q SS   TVPQ F
Sbjct: 1   MEVGLAWLLRAAWIAGTLPILVASIPSSRLSPVHGVLSGFASRGKTLQSSSQKLTVPQSF 60

Query: 60  FLHFYLVGVALTTFLLIIIWGYAYKLASLDSGSLDYSTAASQLVGGSQIYSLHVSHFPTL 119
           F HFYLV V  TT LL+  W YAYK+A LDS SLDYST AS L GGS I SLH S   + 
Sbjct: 61  FSHFYLVAVVWTTILLLATWYYAYKMAPLDSVSLDYSTIASHLTGGSHILSLHKSRSTSA 120

Query: 120 AYRHKIWISVFLLLLMEMQVLRRLYETVYVLKYSSSARMHIFGYLVGLFFYTVAPLTLCY 179
            +R+++W  VFLLLLME+ V+RRLYET+YV  YSSSARMHIFGYL GLFFY  APL+LC 
Sbjct: 121 QHRYRVWRPVFLLLLMELHVMRRLYETLYVFNYSSSARMHIFGYLTGLFFYIAAPLSLCT 180

Query: 180 SCAFEAFNFAAYQMIEANVKNQQTVAV-DFDWWRLVKPFVKLGWCHWVGAAIFAWGWLHQ 238
            CA E FNF A Q+ E NV+ +  +++   DWW  VKP  KLGW  W+GAAIF WGW+HQ
Sbjct: 181 CCAVEVFNFTADQVAEINVEGRDLLSITGSDWWGYVKPITKLGWFEWIGAAIFIWGWVHQ 240

Query: 239 LRCHAILGSLREDREQNEEYGIPRGDWFEIVSSPHYLAEMRRY 281
            RCHAILGS+R++R    EY IP GDWFE+VSSPHYLAEM  Y
Sbjct: 241 CRCHAILGSIRKER--TGEYRIPHGDWFELVSSPHYLAEMVIY 281


>GSVIVT01024163001 assembled CDS
          Length = 355

 Score =  353 bits (906), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 193/336 (57%), Positives = 235/336 (69%), Gaps = 12/336 (3%)

Query: 1   MDIRLDWLLRAAWISATLPILIASFPSSRLNSFHQLLLGFSRRGKTMQPSSH-FTVPQRF 59
           M++ L  LLRAAWI+ TLPILIAS PSSRL+SFH L+LGF+RRGKTM  SS+ FTVPQRF
Sbjct: 1   MELDLVALLRAAWIAGTLPILIASIPSSRLHSFHGLVLGFARRGKTMPSSSYKFTVPQRF 60

Query: 60  FLHFYLVGVALTTFLLIIIWGYAYKLASLDSGSLDYSTAASQLVGGSQIYSLHVSHFPTL 119
           F HFY+V V  TT L++    YAY++A L S  L YST ASQL GGS I+SLH S    L
Sbjct: 61  FCHFYVVAVVWTTLLVLATLLYAYRMAPLVSEPLLYSTVASQLTGGSHIFSLHKSRSTPL 120

Query: 120 AYRHKIWISVFLLLLMEMQVLRRLYETVYVLKYSSSARMHIFGYLVGLFFYTVAPLTLCY 179
            +R+ +W SVFLLLLME+QV+RRLYET+YV  YSSSARMH+FGYL GLFFYT APL+LC 
Sbjct: 121 EHRYLVWRSVFLLLLMEVQVMRRLYETIYVFNYSSSARMHVFGYLTGLFFYTAAPLSLCC 180

Query: 180 SCAFEAFNFAAYQMIEANVKNQ-QTVAVDFDWWRLVKPFVKLGWCHWVGAAIFAWGWLHQ 238
            CA E F FAA Q+ E  VK + Q   ++FDWW  +   +KLGW  W+GAAIF WGW+HQ
Sbjct: 181 VCAPEVFKFAANQLKEFIVKGKNQMPVIEFDWWGYMSSLMKLGWPSWLGAAIFIWGWIHQ 240

Query: 239 LRCHAILGSLREDREQNEEYGIPRGDWFEIVSSPHYLAEMRRYDETLSRGYLYFCHVVGS 298
            RCHAILG L+E +EQ  EYGIP GDWFEIVSSPHYLAE+  Y             VV S
Sbjct: 241 HRCHAILGLLQEHKEQEGEYGIPDGDWFEIVSSPHYLAEIVIYGGL----------VVAS 290

Query: 299 TFPGLSGLMRFHFVTSSTVFRCRDLELIFA*KYADF 334
               L+  + F FV S+ +F   + +  +  K+ ++
Sbjct: 291 GGSDLTIWLLFGFVASNLIFAAAETQRWYLHKFDNY 326