Jatropha Genome Database

JcCA0042771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0042771.10 + phase: 1 /partial
         (435 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008461001 assembled CDS                                       743   0.0  

>GSVIVT01008461001 assembled CDS
          Length = 1509

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/435 (83%), Positives = 404/435 (92%)

Query: 1    SAAGWGRQDDAGVVKFYETLTGVKVEGKLPLLVKETVLRSLPPEWPLDPIDDICRLNKSN 60
            SAAGWGR DDA VVK YETLTGVKVEGKLP++ KE VL SLPPEWP DPIDDI  L++SN
Sbjct: 727  SAAGWGRYDDAAVVKVYETLTGVKVEGKLPVVKKEEVLHSLPPEWPSDPIDDIRTLDQSN 786

Query: 61   SKTLVVLDDDPTGTQTVHDTEVLTEWSVESLVKEFKKKTVCFFILTNSRSLSSEKASELI 120
             KTL+VLDDDPTGTQTVHD EVLTEW+VE LV++F+K+  CFFILTNSR+L+ EKA+ LI
Sbjct: 787  LKTLIVLDDDPTGTQTVHDIEVLTEWNVEPLVEQFRKRPKCFFILTNSRALTPEKATALI 846

Query: 121  KDICRNLSKAAKSVENVDYTVVLRGDSTLRGHFPEEADAAISVLGEMDAWIICPFFLQGG 180
            KDIC N+  AA SV N+DYTVVLRGDSTLRGHFPEEA+AA+SVLGEMDAWIICPFFLQGG
Sbjct: 847  KDICTNIRNAANSVGNIDYTVVLRGDSTLRGHFPEEANAAVSVLGEMDAWIICPFFLQGG 906

Query: 181  RYTIEDVHYVADSDWLVPAGETEFAKDAAFGYKSSNLREWVEEKTQGRVPANTVTSISIQ 240
            RYTI+D+HYVADSD LVPAG+TEFAKDA+FGYKSSNLREWVEEKT GR+PA++VTSISIQ
Sbjct: 907  RYTIDDIHYVADSDRLVPAGDTEFAKDASFGYKSSNLREWVEEKTIGRIPASSVTSISIQ 966

Query: 241  LLRKGGPNAVCELLCNLQKGSTCIVNAASERDMAVFAAGMIQAELKGKSFLCRTAASFVS 300
            LLRKGGP+AVC  LC+LQKGSTCIVNAASERDMAVFAAGMIQAE KGK FLCRTAASFVS
Sbjct: 967  LLRKGGPDAVCMHLCSLQKGSTCIVNAASERDMAVFAAGMIQAERKGKHFLCRTAASFVS 1026

Query: 301  ARIGIIPKAPILPKDLGINKDKSGGLIVVGSYVPKTTKQVEELKIQCGKVLRTIEVSVDK 360
            ARIGIIPKAPILPKDLGINK+++GGLIVVGSYVPKTTKQVEELK+QCG++LR+IE+SVDK
Sbjct: 1027 ARIGIIPKAPILPKDLGINKERNGGLIVVGSYVPKTTKQVEELKLQCGQILRSIEISVDK 1086

Query: 361  LSMKSLEERDEEINRAAELADIFLGVCKDTLIMTSRELITGKSPSESLEINFKVSSALVE 420
            L+MKS EER+EEI+RAAE+AD+FL   KDTLIMTSRELITGKSPSESLEINFKVSSALVE
Sbjct: 1087 LAMKSSEEREEEISRAAEMADVFLRASKDTLIMTSRELITGKSPSESLEINFKVSSALVE 1146

Query: 421  IVRRISTRPRYILAK 435
            IVRRI+TRPRYILAK
Sbjct: 1147 IVRRITTRPRYILAK 1161