Jatropha Genome Database

JcCA0042101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0042101.10 + phase: 0 
         (462 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029933001 assembled CDS                                       709   0.0  
GSVIVT01000835001 assembled CDS                                       493   e-139

>GSVIVT01029933001 assembled CDS
          Length = 1239

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/444 (78%), Positives = 383/444 (86%), Gaps = 11/444 (2%)

Query: 1   MTKVYGTGAYDFKRHRVAEYPVELQTQLSDKPVESKPGSTLPSSITLSEIQRDRLTKIAA 60
           MTKVYGTGAYDFKRHRVAEYPVE   Q++    E K GS +P++ITL EIQRDRLTKIA 
Sbjct: 1   MTKVYGTGAYDFKRHRVAEYPVESANQVA----EPKTGSAIPNTITLLEIQRDRLTKIAE 56

Query: 61  ENWLKTGGTESDGTKKKEFDPELVKQIYETELKVKEGRKTVPLQRVMILEVSQYLENYLW 120
             W K G    D   KK FDP+LVK+IYETEL V  GRKTVPLQRVMILEVSQYLENYLW
Sbjct: 57  AKWSKAG---EDSKPKKPFDPKLVKEIYETELVVSGGRKTVPLQRVMILEVSQYLENYLW 113

Query: 121 PNFDPETATFEHVMSMILMINEKFRENVAAWLCFYDRKDVFKGFLERVLQLKE-GRELSI 179
           PNFDPETA+FEHVMSMILM+NEKFRENVAAW+CFYDRKDVFK F+E+VL+LKE GR LSI
Sbjct: 114 PNFDPETASFEHVMSMILMVNEKFRENVAAWICFYDRKDVFKAFIEKVLRLKEQGRSLSI 173

Query: 180 SEKTNYLVFMINAFQSLEDEIVSETVLKLGSLQSWHCLSYGRFQMELCLNPELIKKWKRM 239
           +EKTNYL+FMINAFQSLEDEIVSETVL+L SLQSW  LSYGRFQMELCLN +LIKKWKRM
Sbjct: 174 AEKTNYLLFMINAFQSLEDEIVSETVLRLASLQSWLSLSYGRFQMELCLNTDLIKKWKRM 233

Query: 240 VKREIKEAMKGGQPFDPSTSLEVKFLRNLIEEFLDVLDFQIFPQKSSINGDGL---ASGF 296
           +KRE KEAMK G PFDPST LE KFLRN+IEEFL+VLD ++F      + D     A GF
Sbjct: 234 IKREAKEAMKQGDPFDPSTMLEAKFLRNIIEEFLEVLDSKVFSHSHGDDEDNELVDAIGF 293

Query: 297 EEVDDSAVLYCERFMEFLIDLLSQLPTRRYLRPLVADVAVVAKCHLSALYKHEKGKLFAQ 356
           E+V+D+ +LYCERFMEFLIDLLSQLPTRRYLRP+V+DVAVVAKCHLSALY HEKGKLFAQ
Sbjct: 294 EKVNDACILYCERFMEFLIDLLSQLPTRRYLRPIVSDVAVVAKCHLSALYTHEKGKLFAQ 353

Query: 357 LVDLLQFYERFEINDHSGTQLTDDEVLQSHYDRFQAFQLLAFKKIPKLRELALSNIGAIH 416
           LVDLLQFYE FEINDH GTQL DDEVLQSHYDR Q+FQLLAFKKIPKLRELAL+NIG IH
Sbjct: 354 LVDLLQFYEGFEINDHVGTQLNDDEVLQSHYDRLQSFQLLAFKKIPKLRELALANIGGIH 413

Query: 417 KRADLSKKLSVLSPEELKDLVCAR 440
           +RADLSK+LSVLSPEELKDLVC +
Sbjct: 414 RRADLSKRLSVLSPEELKDLVCCK 437


>GSVIVT01000835001 assembled CDS
          Length = 1461

 Score =  493 bits (1268), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/329 (75%), Positives = 275/329 (83%), Gaps = 13/329 (3%)

Query: 1   MTKVYGTGAYDFKRHRVAEYPVELQTQLSDKPVESKPGSTLPSSITLSEIQRDRLTKIAA 60
           MTKVYGTGAYDFKRHRVAEYPV+  TQ++D     K GS LP+SITL EIQRDRLTKIA 
Sbjct: 1   MTKVYGTGAYDFKRHRVAEYPVDSTTQVTD----PKTGSALPNSITLLEIQRDRLTKIAE 56

Query: 61  ENWLKTGGTESDGTKK-KEFDPELVKQIYETELKVKEGRKTVPLQRVMILEVSQYLENYL 119
            NW K G    DG+K  K FDP LVK+IYETEL V  GRKTVPLQRVMILEVSQYLENYL
Sbjct: 57  ANWSKAG----DGSKPIKPFDPNLVKEIYETELVVLGGRKTVPLQRVMILEVSQYLENYL 112

Query: 120 WPNFDPETATFEHVMSMILMINEKFRENVAAWLCFYDRKDVFKGFLERVLQLKE-GRELS 178
           WPNFDPET +FEHVMSMILM+NEKFRENVAAW+CFYDRKDVFK F+E+VL+LKE GR L 
Sbjct: 113 WPNFDPETVSFEHVMSMILMVNEKFRENVAAWVCFYDRKDVFKAFIEKVLRLKEQGRSLR 172

Query: 179 ISEKTNYLVFMINAFQSLEDEIVSETVLKLGSLQSWHCLSYGRFQMELCLNPELIKKWKR 238
           I+EKTNYL+FMINAFQSLEDEIVSETVL L SLQSW  LSYGRFQMELCLN +LIKKWKR
Sbjct: 173 IAEKTNYLLFMINAFQSLEDEIVSETVLSLASLQSWLSLSYGRFQMELCLNTDLIKKWKR 232

Query: 239 MVKREIKEAMKGGQPFDPSTSLEVKFLRNLIEEFLDVLDFQIFPQKSSINGDGL---ASG 295
           M+KRE KE MK G+PFDPST LE KFLRN+IEEFL+VLD ++F      + D     A+G
Sbjct: 233 MIKREAKEVMKRGEPFDPSTMLEAKFLRNIIEEFLEVLDSKVFSYSHGDDEDNELVDANG 292

Query: 296 FEEVDDSAVLYCERFMEFLIDLLSQLPTR 324
           FE+V+D+ +LYCERFMEFLIDLLSQLPTR
Sbjct: 293 FEKVNDACILYCERFMEFLIDLLSQLPTR 321



 Score =  213 bits (542), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/118 (85%), Positives = 110/118 (93%)

Query: 323 TRRYLRPLVADVAVVAKCHLSALYKHEKGKLFAQLVDLLQFYERFEINDHSGTQLTDDEV 382
           ++ YLRP+V+DVAVVAKCHLSALY HEKGKLFAQLVDLLQFYE FEINDH GTQL DDEV
Sbjct: 443 SKIYLRPIVSDVAVVAKCHLSALYTHEKGKLFAQLVDLLQFYEGFEINDHVGTQLNDDEV 502

Query: 383 LQSHYDRFQAFQLLAFKKIPKLRELALSNIGAIHKRADLSKKLSVLSPEELKDLVCAR 440
           LQSHYDR Q+FQLLAFKKIPKLRELAL+NIG IH+RADLSK+LSVLSPEELKDLVC +
Sbjct: 503 LQSHYDRLQSFQLLAFKKIPKLRELALANIGGIHRRADLSKRLSVLSPEELKDLVCCK 560