Jatropha Genome Database

JcCA0041501.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0041501.20 - phase: 1 /TE
         (1334 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                        74   5e-13

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 1161 NAPSEFQRIMNDIFNPY-SEFCIVYIDDVLVFSRTLEEHFKHLKTFCMVIEMNGLALSKT 1219
            N P+ F  +MN +F  Y  +F IV++DD+L++SR+LEEH +HL T    +  + L     
Sbjct: 972  NVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLD 1031

Query: 1220 KMDLFKTKVRFLGHYIEQGLIQPIERAMVFGSKFPDELTNKTQLQRFLGCLNYVIDFYPN 1279
            K + + T+V FLGH + +  I  ++ + V   +     TN  +++ FLG   Y   F  +
Sbjct: 1032 KSEFWLTEVNFLGHVVSEAGIA-VDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVED 1090

Query: 1280 LNCMIKPLHDRLKKNTG-PWTAQHTQLVKKIKSLVKEIPYLYIP 1322
             + +  P+    +K     W  +     +++K  +   P L  P
Sbjct: 1091 FSRIAAPMTRLTRKGVKFDWNEECENAFQELKRKLTTAPVLTAP 1134