Jatropha Genome Database

JcCA0040611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0040611.10 - phase: 2 /TE/partial
         (175 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029816001 assembled CDS                                        75   2e-14
GSVIVT01038208001 assembled CDS                                        70   4e-13
GSVIVT01016108001 assembled CDS                                        52   1e-07

>GSVIVT01029816001 assembled CDS
          Length = 1050

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 70/114 (61%), Gaps = 1/114 (0%)

Query: 46  GSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSI 105
           G N+  W++++K+ +  K KLG++ G+  +P   D +Y      N+MV++WL  S+  +I
Sbjct: 591 GCNFLKWSQSVKLFIRVKGKLGYLIGANKAPKPEDHVYQTWDSENSMVMAWLINSMETAI 650

Query: 106 AQSILWIDKATNIWKDLQDRFAQ-GDVIRIFDLQEEIYVFRQGELSVTDYFTQL 158
            Q+ L++  A ++W ++Q+ ++  G+  ++F+++ ++   +QG  SVT Y+  L
Sbjct: 651 GQTYLFLPTAKDLWDEVQETYSDLGNATQMFEIKTKLKDIKQGSHSVTQYYNIL 704


>GSVIVT01038208001 assembled CDS
          Length = 364

 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 35  SALVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVI 94
           S L + +    G NY  W++++ M +  K K  ++ G+  +P  T S Y      N MV+
Sbjct: 35  SHLPITAHKLNGQNYLQWSQSILMFIRGKEKDDYITGASAAPETTASTYKKWIAENNMVM 94

Query: 95  SWLTRSL*PSIAQSILWIDKATNIWKDLQDRFA-QGDVIRIFDLQEEIYVFRQGELSVTD 153
           SWL  S+   I ++ L  D A  IW   ++ F+ + +   I  ++  ++  RQG L VT+
Sbjct: 95  SWLVNSMTADIGENFLSFDTAKEIWNTAKETFSDKENTSEIIQIEGILHDLRQGNLMVTE 154

Query: 154 YFTQLKIL*DELMNF 168
           YF  L  L  +L  F
Sbjct: 155 YFNTLTRLWRQLDTF 169


>GSVIVT01016108001 assembled CDS
          Length = 227

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 7/127 (5%)

Query: 47  SNYHSWARAMKMALASKNKLGFVDGSITSPS--ITDSM-----YHPSQRRNTMVISWLTR 99
           SNY  W   M   + +      + G I +PS  + DS      Y   Q +N +V+ W+  
Sbjct: 36  SNYLLWRTQMLNIIIANGLEEMIHGKIPAPSRFLGDSENINPEYSIWQCQNRLVMCWIYS 95

Query: 100 SL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLK 159
           SL   +   I+ +D A+ IW  L+  F+     RI  L  ++   ++G LS+ +Y  ++K
Sbjct: 96  SLTKGVMAQIIGLDTASEIWTALEKIFSAASKARIMQLHFQLQTTKKGGLSMMEYLLKIK 155

Query: 160 IL*DELM 166
            + D L+
Sbjct: 156 SIVDNLL 162