Jatropha Genome Database

JcCA0040601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0040601.10 - phase: 2 /pseudo/partial
         (256 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010945001 assembled CDS                                       371   e-103
GSVIVT01032866001 assembled CDS                                       255   2e-68
GSVIVT01031120001 assembled CDS                                       238   2e-63
GSVIVT01010943001 assembled CDS                                       163   7e-41
GSVIVT01023711001 assembled CDS                                       131   4e-31
GSVIVT01037906001 assembled CDS                                        64   1e-10
GSVIVT01022020001 assembled CDS                                        51   4e-07
GSVIVT01014602001 assembled CDS                                        49   2e-06
GSVIVT01011044001 assembled CDS                                        48   4e-06

>GSVIVT01010945001 assembled CDS
          Length = 279

 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/229 (80%), Positives = 196/229 (85%), Gaps = 7/229 (3%)

Query: 34  MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKG 93
           MIWDDHQSRCIGELSFRSEVR+VKLRRDRIIVVLEQKIF+YNFADLKLLHQIETIANP+G
Sbjct: 1   MIWDDHQSRCIGELSFRSEVRAVKLRRDRIIVVLEQKIFLYNFADLKLLHQIETIANPRG 60

Query: 94  LCAVSQGAGSLVMVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATAST 153
           LCAVSQ   SLV+VCPGLQKGQVRVEHYAS+RTKF  AHDSR+ACFALT DGQLLATAST
Sbjct: 61  LCAVSQLTASLVLVCPGLQKGQVRVEHYASRRTKFFAAHDSRLACFALTTDGQLLATAST 120

Query: 154 KGTLVRIFNTADGTLLQEVRRGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKINPGS 213
           KGTLVRIFNT+DGT LQEVRRGADRAE+YS+AFSSTAQWLAVSSDKGTVHVF LK+N GS
Sbjct: 121 KGTLVRIFNTSDGTRLQEVRRGADRAEVYSMAFSSTAQWLAVSSDKGTVHVFGLKVNSGS 180

Query: 214 PGTDKSGNTTDPNNAVTSPTSSLSFFKGVLP*VF-------QLRVVSGS 255
            G DKS   +D N AV S   SLSF KGVLP  F       Q R+  GS
Sbjct: 181 LGNDKSHGASDANLAVASSGLSLSFIKGVLPKYFSSEWSVAQFRLHEGS 229


>GSVIVT01032866001 assembled CDS
          Length = 378

 Score =  255 bits (651), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 133/262 (50%), Positives = 163/262 (62%), Gaps = 49/262 (18%)

Query: 3   GGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 62
           GG G+VEMLFR NILALVG G++ QYPP+KV+IWDD++ RCIGE SFRS+          
Sbjct: 84  GGFGIVEMLFRSNILALVGAGTNSQYPPSKVIIWDDYERRCIGEFSFRSD---------- 133

Query: 63  IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEHYA 122
                                 IET+ANP+GLC +S  + + V+ CPGLQ+G VR+EH+ 
Sbjct: 134 ----------------------IETLANPRGLCCLSHHSNTFVLACPGLQRGLVRIEHFG 171

Query: 123 SKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIY 182
              TK I AHDS +AC  LT DG LLA+AS KGTL+RIFNT DGT LQEVRRG+D AEIY
Sbjct: 172 LNMTKLIKAHDSHVACLTLTMDGLLLASASMKGTLIRIFNTMDGTRLQEVRRGSDNAEIY 231

Query: 183 SLAFSSTAQWLAVSSDKGTVHVFSLKI--------------NPGSPGTDKSGNTTDP--- 225
           S+A S   QWLAVSS+KGTVH+F+L++                 +P    S N+ D    
Sbjct: 232 SIALSPNVQWLAVSSEKGTVHIFNLRVRVVGEDSSNHSITAQGPAPFYRNSSNSLDALIS 291

Query: 226 NNAVTSPTSSLSFFKGVLP*VF 247
            NA  +P SSLSF KG LP  F
Sbjct: 292 PNAGANPGSSLSFMKGFLPKYF 313


>GSVIVT01031120001 assembled CDS
          Length = 209

 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/159 (74%), Positives = 135/159 (84%), Gaps = 7/159 (4%)

Query: 104 LVMVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNT 163
           +V+VCPGL KGQVRVEHY SKRTKFIMAHDSRIACFALTQDG+LLAT+S+KGTLVRIFNT
Sbjct: 1   MVLVCPGLLKGQVRVEHYNSKRTKFIMAHDSRIACFALTQDGRLLATSSSKGTLVRIFNT 60

Query: 164 ADGTLLQEVRRGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKINPGSPGTDKSGNTT 223
            DGTLLQEVRRGADRAEIYS+AFSS+AQWLAVSSDKGTVHVFSLK+  GS G+D+S +++
Sbjct: 61  LDGTLLQEVRRGADRAEIYSVAFSSSAQWLAVSSDKGTVHVFSLKVESGSLGSDRSRSSS 120

Query: 224 DPNNAVTSPTSSLSFFKGVLP*VF-------QLRVVSGS 255
           +PN +V S  SSLSF KGVLP  F       Q R+  GS
Sbjct: 121 EPNLSVPSAVSSLSFMKGVLPRYFSSEWSVAQFRLHEGS 159


>GSVIVT01010943001 assembled CDS
          Length = 170

 Score =  163 bits (412), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 93/119 (78%), Gaps = 7/119 (5%)

Query: 144 DGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIYSLAFSSTAQWLAVSSDKGTVH 203
           DGQLLATAS+KGTLVRI+NT DG LLQE+RRGADRAEIYS+AFSSTAQWL VSSDKGTVH
Sbjct: 2   DGQLLATASSKGTLVRIYNTMDGVLLQELRRGADRAEIYSMAFSSTAQWLVVSSDKGTVH 61

Query: 204 VFSLKINPGSPGTDKSGNTTDPNNAVTSPTSSLSFFKGVLP*VF-------QLRVVSGS 255
           VFSLK+N  SPG DKS   ++ N AV S TSSLSF KGVLP  F       Q R+  GS
Sbjct: 62  VFSLKVNLASPGNDKSRGASNSNLAVASSTSSLSFIKGVLPKYFSSEWSVAQFRLPEGS 120


>GSVIVT01023711001 assembled CDS
          Length = 394

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 118/210 (56%), Gaps = 5/210 (2%)

Query: 3   GGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 62
           GG  +VEMLF  ++LA+VG G  P   P ++ +++      + EL+F + V +++L R R
Sbjct: 47  GGFIIVEMLFSSSLLAIVGAGEQPSLSPRRLCLFNTTTGAALRELNFLTSVLAIRLNRKR 106

Query: 63  IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPG-LQKGQVRVEHY 121
           ++VVL++K ++Y+   L +L  I+T+ N KGLCA S       +  P    +G V V + 
Sbjct: 107 LVVVLQEKTYIYDLNSLSILDTIDTVPNSKGLCAFSPSLDGCFLALPASTTRGSVLVYNV 166

Query: 122 ASKRTKF-IMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAE 180
               +   I AH S +A    + +G  +ATAS +GT++R+   ++ T     RRGA  + 
Sbjct: 167 MELHSHCEIDAHRSPLAAIVFSPNGMYIATASEQGTIIRVHLISEATKSYSFRRGAYPST 226

Query: 181 IYSLAFSSTAQW---LAVSSDKGTVHVFSL 207
           I+SL+F  + Q+   L  +S  G+VH FSL
Sbjct: 227 IFSLSFGPSTQFPDVLVATSSSGSVHAFSL 256


>GSVIVT01037906001 assembled CDS
          Length = 94

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 51/84 (60%)

Query: 10 MLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ 69
          MLF  ++LA+VG G      P ++ +++      + EL+F + V +++L   R++VVL++
Sbjct: 1  MLFSSSLLAIVGAGEQLSLSPRRLCLFNTTTGAALQELNFSTAVLAIRLNWKRLVVVLQE 60

Query: 70 KIFVYNFADLKLLHQIETIANPKG 93
          K ++Y+   L +L  I+T+ N KG
Sbjct: 61 KTYIYDLNSLSILDTIDTVPNSKG 84


>GSVIVT01022020001 assembled CDS
          Length = 807

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 131 AHDSRIACFALTQDGQLLATASTKGTLVRIFN--------------TADGTLLQEVRRGA 176
           AH S I+       G LL TAS  G  + IF                A    L ++ RG 
Sbjct: 352 AHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSCSQNASGYDWNASHVHLYKLHRGM 411

Query: 177 DRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKINPGSPG 215
             A I  + FS  +QW+A+ S KGT H+F L    G  G
Sbjct: 412 TSAVIQDICFSHYSQWIAIVSSKGTCHIFVLSPFGGESG 450


>GSVIVT01014602001 assembled CDS
          Length = 491

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query: 131 AHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTL--------------LQEVRRGA 176
           AH S I+       G LL TAS +G  + +F    G                L  ++RG 
Sbjct: 379 AHKSPISALCFDPSGTLLVTASVQGHNINVFRIMPGVAGSSSGSDTCASYAHLYRLQRGF 438

Query: 177 DRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKINPGS 213
             A I  ++FS  + W+ +SS +GT H+F++  + GS
Sbjct: 439 TNAVIQDISFSDDSNWIMISSSRGTSHLFAISPSGGS 475


>GSVIVT01011044001 assembled CDS
          Length = 951

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 17/92 (18%)

Query: 131 AHDSRIACFALTQDGQLLATASTKGTLVRIFN-----TADGT------------LLQEVR 173
           AH S I+       G LL TAS  G  + IF      T  G+             L ++ 
Sbjct: 371 AHTSPISALCFDPSGTLLVTASVHGNNINIFRIMPSCTCSGSGCQSYDWSSSHVHLYKLH 430

Query: 174 RGADRAEIYSLAFSSTAQWLAVSSDKGTVHVF 205
           RG   A I  ++FS  +QW+++ S KGT HVF
Sbjct: 431 RGMTTAIIQDISFSHYSQWISIVSSKGTCHVF 462