Jatropha Genome Database

JcCA0038081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0038081.10 - phase: 1 /pseudo/partial
         (198 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010522001 assembled CDS                                       128   1e-30
GSVIVT01008556001 assembled CDS                                        80   5e-16

>GSVIVT01010522001 assembled CDS
          Length = 421

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 102/164 (62%), Gaps = 30/164 (18%)

Query: 42  RKNLFPGSLSQGYRSGKQFPFLQCTSSSAVPRESVCQTIXXXXXXXXXXXXXQKMFSDGA 101
           R+N FP S S+ YR GKQFPFLQ  + + +P  SVCQ +                     
Sbjct: 229 RQNSFPESFSRSYR-GKQFPFLQGPNPT-LPGTSVCQPL--------------------L 266

Query: 102 NRVIDSNRALSLLSSPSAQTREIGLSHMVQPDLNPPARSLNPSLNFNAL-------GMGS 154
           + +I S+RALSLLSSP  +T+EIGLS MVQ +  PPA+SL PSL++  L       GMG 
Sbjct: 267 DPMISSDRALSLLSSPPPETQEIGLSRMVQQNPIPPAQSLIPSLHYTGLSQYASSQGMG- 325

Query: 155 GPVESVLVSDGSSNANLHGQDMFQIVPDGSSANGSLQTLSFSWE 198
           G V SVLVSDGSSNANLH   +FQ+ PDGSS N   QTLSFSWE
Sbjct: 326 GSVGSVLVSDGSSNANLHCPAIFQLGPDGSSTNSPHQTLSFSWE 369


>GSVIVT01008556001 assembled CDS
          Length = 377

 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 20/165 (12%)

Query: 39  LQQRKNLFPGSLSQGYRSGKQFPFLQCT----SSSAVPRESVCQTIXXXXXXXXXXXXXQ 94
           L ++++L  GS S  Y+ GKQ  FLQ      S+       VCQ +              
Sbjct: 228 LLEKQHLHLGSSSSFYKGGKQLTFLQADHPSLSNYTTSEAPVCQPLAGHGC--------- 278

Query: 95  KMFSDG-ANRVIDSNRALSLLSSPSAQTREIGLSHMVQPDLNPPARSLNPSLNFNALGMG 153
           KMF D   N+V++S+ ALSLLSSP  Q+  I LS+MVQP+    A+   PSL++N     
Sbjct: 279 KMFYDRLTNQVLESDCALSLLSSPQTQSSGISLSNMVQPNSVSLAQPSAPSLHYN----- 333

Query: 154 SGPVESVLVSDGSSNANLHGQDMFQIVPDGSSANGSLQTLSFSWE 198
           + PV+SVLVS+     ++H   +F I  DGSS N + Q L F W+
Sbjct: 334 NQPVDSVLVSNAGV-TDIHCPGIFHIGSDGSSGNEAPQKLPFFWD 377