Jatropha Genome Database

JcCA0036251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0036251.20 - phase: 2 /TE/pseudo/partial
         (1336 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000708001 assembled CDS                                        63   8e-10

>GSVIVT01000708001 assembled CDS
          Length = 3033

 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 47/88 (53%)

Query: 679  NGRDTRNVMVDNGSALCVCSLKMLSKFKIEESELEPSNMVVKAYDNTMRNAKGTFKAKIS 738
            +GR   +V++DNGSAL VC L          S+  PS   V+AYD+T R   GT + ++ 
Sbjct: 2946 SGRRVPSVLLDNGSALNVCPLATAIALGYAPSDFGPSTQTVRAYDSTRREVMGTLEIELL 3005

Query: 739  TGTVESWVDVIVLDILANYALLLGRPWL 766
             G         VL I  ++ LLLGRPW+
Sbjct: 3006 IGPATFVAVFQVLRIPTSFNLLLGRPWI 3033