Jatropha Genome Database

JcCA0036251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0036251.10 + phase: 1 /pseudo/partial
         (168 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008026001 assembled CDS                                       155   1e-38
GSVIVT01020012001 assembled CDS                                       136   4e-33
GSVIVT01009203001 assembled CDS                                        84   2e-17
GSVIVT01012543001 assembled CDS                                        84   3e-17
GSVIVT01000320001 assembled CDS                                        83   5e-17
GSVIVT01000325001 assembled CDS                                        80   4e-16
GSVIVT01000324001 assembled CDS                                        79   8e-16
GSVIVT01012547001 assembled CDS                                        79   1e-15
GSVIVT01000331001 assembled CDS                                        75   1e-14
GSVIVT01038510001 assembled CDS                                        74   2e-14
GSVIVT01000808001 assembled CDS                                        67   4e-12
GSVIVT01008576001 assembled CDS                                        46   7e-06

>GSVIVT01008026001 assembled CDS
          Length = 167

 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 84/97 (86%), Gaps = 1/97 (1%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           +P W YAKLI TCWLVIPYFSGAAYVYEHFVRPLFVNP+ TVNIWYVPRKKDVFSKPDDI
Sbjct: 72  LPFWPYAKLIATCWLVIPYFSGAAYVYEHFVRPLFVNPR-TVNIWYVPRKKDVFSKPDDI 130

Query: 122 LTAAERYIEENGTEAFEKLIHRVSDEALTLGFSHLLL 158
           LTAAE+YI+ENG +AFE +I+RV  E+ + G ++ + 
Sbjct: 131 LTAAEKYIQENGPDAFENIINRVDRESKSRGSNYAIF 167


>GSVIVT01020012001 assembled CDS
          Length = 171

 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 63  PIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDIL 122
           PIW YAKLI TCWLV+P F+GAAYVY+HF+RP +++P QT  IWY+PRKKD+F KPDD+L
Sbjct: 71  PIWPYAKLIATCWLVLPSFNGAAYVYKHFIRPFYMSP-QTSQIWYIPRKKDIFGKPDDVL 129

Query: 123 TAAERYIEENGTEAFEKLIHRVSDEA 148
           TAAE+YIEE+GTEAFE++I +   EA
Sbjct: 130 TAAEKYIEEHGTEAFERMISKADREA 155


>GSVIVT01009203001 assembled CDS
          Length = 171

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 55/81 (67%), Gaps = 1/81 (1%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKK-DVFSKPDD 120
           IP W +AK + T  LVI YF GA+YVY+HFV P      Q   I+ + RKK D++S+PD+
Sbjct: 70  IPFWPHAKGVATFLLVIHYFQGASYVYQHFVSPSISGNLQICCIFSILRKKDDIWSEPDN 129

Query: 121 ILTAAERYIEENGTEAFEKLI 141
            L AAERYIEENG E  EKL+
Sbjct: 130 FLDAAERYIEENGPEELEKLL 150


>GSVIVT01012543001 assembled CDS
          Length = 509

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 48/80 (60%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           IP W Y KL++ CWLVIP+F G+ YVY++ V P      Q V  W     K +F   ++ 
Sbjct: 70  IPFWPYIKLMIICWLVIPHFDGSHYVYQNLVCPCLSMDTQVVMNWRFNESKKLFHSRENF 129

Query: 122 LTAAERYIEENGTEAFEKLI 141
           L  A+RYI+ENG EA  KLI
Sbjct: 130 LVVADRYIKENGAEALAKLI 149


>GSVIVT01000320001 assembled CDS
          Length = 621

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 47/82 (57%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           +P W Y KL++ CWLVIP F G+ YVY+H V P      Q V  W     K  F   +  
Sbjct: 166 VPFWPYIKLMVICWLVIPQFDGSYYVYQHLVHPCLSMDPQVVMNWLFNESKKKFHSRETF 225

Query: 122 LTAAERYIEENGTEAFEKLIHR 143
           L +A++Y +ENG EA EKL+ R
Sbjct: 226 LVSADQYTKENGPEALEKLLAR 247


>GSVIVT01000325001 assembled CDS
          Length = 424

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 49/82 (59%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           +P W Y KL++ CWLVI  F G+ YVY+H V+P      Q V  W     K  F   ++ 
Sbjct: 201 VPFWPYIKLMVICWLVIQQFDGSYYVYQHLVQPCLSMDPQAVMNWLFNESKKKFHSRENF 260

Query: 122 LTAAERYIEENGTEAFEKLIHR 143
           L +A+RYI+ENG EA EKL+ R
Sbjct: 261 LVSADRYIKENGPEALEKLLSR 282


>GSVIVT01000324001 assembled CDS
          Length = 207

 Score = 79.3 bits (194), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           IP W Y KL++ CW+VIP+F G+ YVY+H V P      Q V  W     K  F   ++ 
Sbjct: 70  IPFWPYIKLMVICWMVIPHFDGSYYVYQHLVHPCLSIDPQVVMNWLFNESKKKFHSRENF 129

Query: 122 LTAAERYIEENGTEAFEKLIHR 143
           L +A++YI+ENG EA +KL+ R
Sbjct: 130 LVSADQYIKENGPEALKKLLAR 151


>GSVIVT01012547001 assembled CDS
          Length = 230

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           +P+W Y KL++ CWLVI  F G+ YVY+H V+P      Q V  W     K  F   ++ 
Sbjct: 70  VPVWPYIKLMVICWLVIRQFDGSYYVYQHLVQPCLSMDPQVVMNWLFNESKKKFHSRENF 129

Query: 122 LTAAERYIEENGTEAFEKLIHR 143
           L +A++YI+ENG EA EKL+ R
Sbjct: 130 LVSADQYIKENGPEALEKLLAR 151


>GSVIVT01000331001 assembled CDS
          Length = 366

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           IP W Y KL++ CWLVIP+F G+ Y+Y++ V P      Q V  W     K  F   ++ 
Sbjct: 8   IPFWPYIKLMVICWLVIPHFDGSYYIYQYLVHPRLSMDPQVVMNWLFNESKKKFHSRENF 67

Query: 122 LTAAERYIEENGTEAFEKLIHR 143
           L +A++YI+E G EA EKL+ R
Sbjct: 68  LVSADQYIKEKGPEALEKLLAR 89


>GSVIVT01038510001 assembled CDS
          Length = 361

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 48/80 (60%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDVFSKPDDI 121
           IP W Y KL++ C LV+P+F G+ YVY+H V P      Q V  W     K +    ++ 
Sbjct: 70  IPFWPYIKLMIICCLVMPHFDGSYYVYQHLVHPCLSMVTQVVMNWLFNESKKLSPSRENF 129

Query: 122 LTAAERYIEENGTEAFEKLI 141
           L AA++YI+ENG EA EKL+
Sbjct: 130 LVAADQYIKENGAEALEKLL 149


>GSVIVT01000808001 assembled CDS
          Length = 134

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 62  IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVRPLFVNPKQTVNIWYVPRKKDV-FSKPDD 120
           +P WSY KL+   WLV+P F+GAAY+Y+HFVR  +V    TV+  Y   ++ V      D
Sbjct: 45  LPFWSYMKLLFCLWLVLPIFNGAAYIYDHFVRK-YVKVGGTVSSSYPESQRKVLLMMTPD 103

Query: 121 ILTAAERYIEENGTEAFEKLIHRVSDEA 148
              + E YI ++G EAFE+++     EA
Sbjct: 104 ARRSVEYYISKHGPEAFERVVKAAEKEA 131


>GSVIVT01008576001 assembled CDS
          Length = 141

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 62 IPIWSYAKLIMTCWLVIPYFSGAAYVYEHFVR 93
          IPIW   KL+   WLV+P F GAA++YE FVR
Sbjct: 67 IPIWYDVKLVFVAWLVLPQFRGAAFIYEKFVR 98