Jatropha Genome Database

JcCA0032471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0032471.10 - phase: 1 /partial
         (397 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033832001 assembled CDS                                       131   4e-31
GSVIVT01009485001 assembled CDS                                       129   3e-30
GSVIVT01001940001 assembled CDS                                       100   2e-21
GSVIVT01036137001 assembled CDS                                        95   5e-20
GSVIVT01008961001 assembled CDS                                        75   5e-14
GSVIVT01037434001 assembled CDS                                        56   3e-08

>GSVIVT01033832001 assembled CDS
          Length = 353

 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 69/123 (56%), Positives = 78/123 (63%)

Query: 43  LARQTSIYSLTFDELQSTMGGIGKDFGSMNMDELLKNIWTAEETQNMVAASTGPQESLQR 102
           L RQ+SIYSLT DE Q T+   GK+FGSMNMDE L +IWTAEE Q          + L R
Sbjct: 32  LGRQSSIYSLTLDEFQHTLCENGKNFGSMNMDEFLTSIWTAEENQATNFNHISNSQILAR 91

Query: 103 QGSLTLPRTLSQKTVDEVWKDISKEYVNXXXXXXXVANVPQRQQTLGEMTLEEFLVRAGV 162
           QGSL+LP    QKTVDEVW +I K            A    RQ TLGEMTLE+FL+RAGV
Sbjct: 92  QGSLSLPAPFCQKTVDEVWSEIHKAQQQQQQDSVHNAESAHRQPTLGEMTLEDFLIRAGV 151

Query: 163 VRE 165
           VRE
Sbjct: 152 VRE 154



 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 35/41 (85%), Gaps = 2/41 (4%)

Query: 331 GGLRGRRAT--GAVEKVVERRQRRMIKNRESAARSRARKQV 369
           GGLRGR+    G VEKVVERRQRRMIKNRESAARSRARKQ 
Sbjct: 249 GGLRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQA 289


>GSVIVT01009485001 assembled CDS
          Length = 263

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 81/128 (63%), Gaps = 34/128 (26%)

Query: 71  MNMDELLKNIWTAEETQNMVAASTGPQESLQRQGSLTLPRTLSQKTVDEVWKDISKEYVN 130
           MNMDELLKNIW+AEE Q M A          RQGSLTLPRTL+  +              
Sbjct: 1   MNMDELLKNIWSAEEAQTMAA----------RQGSLTLPRTLTGGS-------------- 36

Query: 131 XXXXXXXVANVPQRQQTLGEMTLEEFLVRAGVVREDAQIAGKINANGGFYGDLARSGNNS 190
                    N+PQRQ TLGEMTLEEFLVRAGVVRED Q+AGK N NGGF+GDLA  GN +
Sbjct: 37  ---------NLPQRQPTLGEMTLEEFLVRAGVVREDTQLAGKPN-NGGFFGDLANLGNGN 86

Query: 191 GFGLGFQQ 198
           G G+ FQQ
Sbjct: 87  GLGIAFQQ 94



 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/70 (85%), Positives = 65/70 (92%), Gaps = 1/70 (1%)

Query: 300 TGSPANQLSSDGITKSNGDTSSVSPVPYVFNGGLRGRRATGAVEKVVERRQRRMIKNRES 359
           +GSPANQ SSDGI KSNGDTSSVSPVPY FNGG+RGR+ +GAVEKV+ERRQRRMIKNRES
Sbjct: 138 SGSPANQ-SSDGIGKSNGDTSSVSPVPYAFNGGIRGRKCSGAVEKVIERRQRRMIKNRES 196

Query: 360 AARSRARKQV 369
           AARSRARKQ 
Sbjct: 197 AARSRARKQA 206


>GSVIVT01001940001 assembled CDS
          Length = 222

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 72/125 (57%), Gaps = 28/125 (22%)

Query: 49  IYSLTFDELQSTMGGIGKDFGSMNMDELLKNIWTAEETQNMVAASTGPQESLQRQGSLTL 108
           +YSLT DE+Q+ +G +GK   SMN+DELLKN+WT                      SL+L
Sbjct: 1   MYSLTLDEVQNQLGDLGKPLTSMNLDELLKNVWTP---------------------SLSL 39

Query: 109 PRTLSQKTVDEVWKDISKEYVNXXXXXXXVANVPQRQQTLGEMTLEEFLVRAGVVRE--D 166
              LS+KTVDEVW+DI     N            +RQ TLGEMTLE+FLV+AGVV E  D
Sbjct: 40  TGALSKKTVDEVWRDIQGHGKNSEEKKSR-----ERQPTLGEMTLEDFLVKAGVVAEPSD 94

Query: 167 AQIAG 171
            +IAG
Sbjct: 95  KKIAG 99



 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 26/28 (92%)

Query: 342 VEKVVERRQRRMIKNRESAARSRARKQV 369
           +EK VERRQ+RMIKNRESAARSRARKQ 
Sbjct: 146 IEKTVERRQKRMIKNRESAARSRARKQA 173


>GSVIVT01036137001 assembled CDS
          Length = 324

 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 13/135 (9%)

Query: 41  FPLA-RQTSIYSLTFDELQSTMGGIGKDFGSMNMDELLKNIWTAEE-TQNMVAASTGP-- 96
           FP   RQ S++SLT DE Q   G   K FGSMNMDEL+ +IW  +E     V++   P  
Sbjct: 26  FPAPIRQNSVFSLTLDEYQVRSG---KSFGSMNMDELINSIWNGDENILYSVSSQDEPNN 82

Query: 97  ------QESLQRQGSLTLPRTLSQKTVDEVWKDISKEYVNXXXXXXXVANVPQRQQTLGE 150
                 Q  L RQ S ++P  L +KT+DEVW +I+K             +  Q +QT GE
Sbjct: 83  DKHMADQTDLPRQASFSIPPPLCKKTIDEVWSEINKNKQQQNSNNNGSNDSVQGEQTFGE 142

Query: 151 MTLEEFLVRAGVVRE 165
           MTLE+FLV+AGVV++
Sbjct: 143 MTLEDFLVKAGVVQD 157



 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 27/34 (79%)

Query: 336 RRATGAVEKVVERRQRRMIKNRESAARSRARKQV 369
           R   G +E  VERRQRRMIKNRESAARSRARKQ 
Sbjct: 232 RTTDGTLEMAVERRQRRMIKNRESAARSRARKQA 265


>GSVIVT01008961001 assembled CDS
          Length = 281

 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 15/135 (11%)

Query: 41  FPLARQTSIYSLTFDELQSTMGGIGKDFGSMNMDELLKNIWTAEETQNMVAASTGPQESL 100
           FP   Q  +Y L F+ELQ+ +G +GK   SM +DELLK++ +AE+ Q  +        S 
Sbjct: 17  FP---QGYLYHLIFNELQTQLGNVGKPLSSMYLDELLKHVISAEKGQYFMQNPAASSSSS 73

Query: 101 QRQ------GSLTLPRTLSQKTVDEVWKDISKEYVNXXXXXXXVANVP-QRQQTLGEMTL 153
                    G+  L   L +KTV+EVW++I               N P Q   TLGE TL
Sbjct: 74  SSSPASLFLGNFNLNGVLDKKTVEEVWEEILHH-----QHLSGADNGPIQHLSTLGETTL 128

Query: 154 EEFLVRAGVVREDAQ 168
           EEFLVRAG+  E AQ
Sbjct: 129 EEFLVRAGLPVEAAQ 143



 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 301 GSPANQLSSDGITKSNGDTSSVSPVPYVFNGGLRGRRATGAVEKVVERRQRRMIKNRESA 360
           G   NQ++      +   +S  SPV        R R  +  + K +ERRQ+RMIKNRESA
Sbjct: 169 GYSKNQMAMSTAVPAVTTSSPNSPVAVE-----RKRWFSDEMMKTIERRQKRMIKNRESA 223

Query: 361 ARSRARKQ 368
           ARSRARKQ
Sbjct: 224 ARSRARKQ 231


>GSVIVT01037434001 assembled CDS
          Length = 230

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 99  SLQRQGSLTLPRTLSQKTVDEVWKDISKEYVNXXXXXXXVANVPQRQQTLGEMTLEEFLV 158
           SLQRQ SLT+ + LS+KTV+EVW DI +                 R+ TLGEM LE+FLV
Sbjct: 49  SLQRQASLTIAQALSEKTVEEVWSDIQQ---GEKKKCGDDIKGQVREPTLGEMKLEDFLV 105

Query: 159 RAGVVREDAQIAG 171
           +A V  +   I G
Sbjct: 106 KAAVFVKGLDIVG 118