Jatropha Genome Database

JcCA0030161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0030161.10 + phase: 0 /partial
         (167 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024197001 assembled CDS                                       304   1e-83

>GSVIVT01024197001 assembled CDS
          Length = 413

 Score =  304 bits (779), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 144/163 (88%), Positives = 156/163 (95%)

Query: 1   FHASELEDLAPDVLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVDKLEDL 60
           FHAS+LEDLA D LSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPR+IWSKYV+KLEDL
Sbjct: 184 FHASKLEDLASDELSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDL 243

Query: 61  KYEENSLKAVRCLNDMVTNALMHVDDCLKYMSALRDPAIFRFCVIPQIMAIGTLALCYNN 120
           K EENS+KAV+CLNDMVTNAL+H++DCL YMSAL+ PAIFRFC IPQIMAIGTLALCYNN
Sbjct: 244 KEEENSIKAVQCLNDMVTNALIHMEDCLTYMSALQSPAIFRFCAIPQIMAIGTLALCYNN 303

Query: 121 IEVFRGVVKMRRGLTAKVIYQTKSMADVYGAFFDFSCMLKSKV 163
           IEVFRGVVKMRRGLTAKVI +TK+M+DVYGAFFDFSCMLKSKV
Sbjct: 304 IEVFRGVVKMRRGLTAKVIDRTKAMSDVYGAFFDFSCMLKSKV 346