Jatropha Genome Database

JcCA0029841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029841.20 + phase: 0 
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016721001 assembled CDS                                       134   6e-32
GSVIVT01015042001 assembled CDS                                       116   1e-26
GSVIVT01023256001 assembled CDS                                        65   5e-11
GSVIVT01000967001 assembled CDS                                        62   3e-10
GSVIVT01003113001 assembled CDS                                        62   3e-10
GSVIVT01011679001 assembled CDS                                        59   2e-09
GSVIVT01008453001 assembled CDS                                        48   5e-06

>GSVIVT01016721001 assembled CDS
          Length = 239

 Score =  134 bits (336), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 100/246 (40%), Positives = 131/246 (53%), Gaps = 33/246 (13%)

Query: 42  INGKIEAKGS-ESSRLPKTTLNLL-PDIEQNSSAENPSRPSLSAEIKTADFFPKFVGSGS 99
           + GK E KG  ES +    + +LL  D    +S +N      S+ +K++DF+P+F G GS
Sbjct: 1   MAGKSETKGRPESFKSSTMSFDLLNKDKSSEASGQNVGG---SSNLKSSDFYPQFAGFGS 57

Query: 100 PYPVEDSANKSADLRKPPSSIPADPVPAQMTIFYGGRVMVFDDFPADKAKEIFALAAKGS 159
              ++++ N  AD RK   S   +   +QMTIFY G+V+VF+DFPA+KA+E+  LAAKG+
Sbjct: 58  LASIDEAINM-ADFRK---SATTESETSQMTIFYAGQVLVFNDFPAEKAREVMLLAAKGT 113

Query: 160 SNTTNGFL-TSLPTASAMDKSRTPSVSNDA-------------------GGEGLQLRPQD 199
              T+GFL TS P       S  PS S  A                           PQ 
Sbjct: 114 PQNTSGFLSTSGPEKINTGSSTAPSPSIPASPATTPNPQALSSGTFSIPASPAATPNPQA 173

Query: 200 TNGSDLPIARRASLHRFLEKRKERASSKAPYQMXXXXXXXXXXXXDE----EKEEGQSSK 255
             GS+LPIARR SLHRFLEKRK+R +SKAPYQ+            D      K+EGQSSK
Sbjct: 174 PLGSELPIARRNSLHRFLEKRKDRVNSKAPYQVNNPSRPSPKPEEDTNPKLNKDEGQSSK 233

Query: 256 QFDLNL 261
           Q DL L
Sbjct: 234 QLDLRL 239


>GSVIVT01015042001 assembled CDS
          Length = 217

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/184 (41%), Positives = 104/184 (56%), Gaps = 22/184 (11%)

Query: 59  TTLNLLPDIEQNSSAENPSRPSLSAEIKTADFFPKFVGSGS-------PYPVEDSANKSA 111
           TT+NL P  E+  SA     P+ +  +K+ + FP+  G GS       P  V  S  KS 
Sbjct: 21  TTMNLFPMTER--SAGVSGIPARNMNLKSMNLFPQQAGFGSSVSKDDAPKIVNSSVKKSG 78

Query: 112 DLRKPPSSIPADPVPAQMTIFYGGRVMVFDDFPADKAKEIFALAAKGSSNTTNGFLTSLP 171
           ++         +P  AQMTIFYGG+V+VF+DFPADKAKE+  LA  GSS   +  + +  
Sbjct: 79  NV---------EPQTAQMTIFYGGQVIVFNDFPADKAKEVMRLAGMGSSPVPSTTVKNPI 129

Query: 172 TASAMDKSR---TPSVSNDAGGEGLQLRPQDTNGSDLPIARRASLHRFLEKRKERASSKA 228
            A  M  S     P+ +N    E +Q RP      +LPIAR+ASLHRFLEKRK+R +++A
Sbjct: 130 DAGGMAPSNPNVVPNFANSLIQERIQ-RPAQPVACELPIARKASLHRFLEKRKDRITARA 188

Query: 229 PYQM 232
           PY +
Sbjct: 189 PYNI 192


>GSVIVT01023256001 assembled CDS
          Length = 207

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 14/105 (13%)

Query: 127 AQMTIFYGGRVMVFDDFPADKAKEIFALAAKGSSNTTNGFLTSLPTASAMDKSRTPSVS- 185
           AQ+TIFY G + V+D    DK + I   A + SS T          + AM   + P+++ 
Sbjct: 74  AQLTIFYAGTINVYDHITMDKVQTILHFARESSSPTN---------SEAMIPKKDPTIAP 124

Query: 186 NDAGGEGLQLRPQDTNGSDLPIARRASLHRFLEKRKERASSKAPY 230
           +   G     R Q    +D PIAR++SL RFLEKR++R +S++PY
Sbjct: 125 SHPSGLPSFCRLQ----ADFPIARKSSLQRFLEKRRDRITSRSPY 165


>GSVIVT01000967001 assembled CDS
          Length = 212

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 21/110 (19%)

Query: 124 PVPAQ---MTIFYGGRVMVFDDFPADKAKEIFALAAKGSSNTTNGFLTSLPTASAMDKSR 180
           PV A+   +TIFY G V VFD  P ++ + I  LA  GS+ T                  
Sbjct: 99  PVSAETTPITIFYNGTVSVFDVSP-EQIESIMKLALDGSTKTVE---------------- 141

Query: 181 TPSVSNDAGGEGLQLRPQDTNGSDLPIARRASLHRFLEKRKERASSKAPY 230
            P+ S  A     + +  +T   DLP+ARR SLHRFLEKRKER +S  PY
Sbjct: 142 -PADSKLAIPPNEEQQLLETLNGDLPLARRKSLHRFLEKRKERLTSVYPY 190


>GSVIVT01003113001 assembled CDS
          Length = 341

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 66/136 (48%), Gaps = 24/136 (17%)

Query: 116 PPSSIPADPVPA-QMTIFYGGRVMVFDDFPADKAKEIFALAAKG----SSNTTNGFLTSL 170
           PP ++ A   PA QMTIFY G+V V+DD   DKAK I  LAA           +G    L
Sbjct: 134 PPRTLDAMNGPAGQMTIFYCGKVNVYDDVSMDKAKAIMQLAASSLHLHQEAPCDGTPELL 193

Query: 171 PTASAMDKSRT-----------PSVSNDAGGEGLQLRPQDTN--------GSDLPIARRA 211
           P +  +  +             P++      E  QL  +++N         +++P +R+A
Sbjct: 194 PFSCHLRAASVKIGPSSPTVIYPTLQTVKMTENCQLHREESNIFREDNHPAAEVPTSRKA 253

Query: 212 SLHRFLEKRKERASSK 227
           S+ R+LEKRK+R  SK
Sbjct: 254 SVQRYLEKRKDRFKSK 269


>GSVIVT01011679001 assembled CDS
          Length = 384

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 77/186 (41%), Gaps = 52/186 (27%)

Query: 99  SPYPVEDSANKSADLRKPPSSIPADPVPAQMTIFYGGRVMVFDDFPADKAKEIFALAAKG 158
           +P+ +  SA   A + +P ++      P+Q+TIFY G V V+DD   +KA+ I  LA  G
Sbjct: 162 APHGILPSAGSFAGITEPWNNFKTSGSPSQLTIFYAGTVNVYDDISPEKAQAIMFLAGNG 221

Query: 159 SSNTT-------------------NGFLTSLPT--------ASAMDKSRTPSVSNDAGGE 191
           +S  +                   +G L + P         +S +  S  P   + +G  
Sbjct: 222 ASMASRMGQPRAQVQTPASKLAAGDGVLANQPMNISPCSGLSSPISVSSHPVAQSGSGST 281

Query: 192 GLQ--LRPQDTNGSDLPI-----------------------ARRASLHRFLEKRKERASS 226
             +  L  + T  S  P+                       AR+ASL RFLEKRKER  S
Sbjct: 282 STEEVLAAKTTGVSATPVTKLDSPKMLSVAATPMMPSAVPQARKASLARFLEKRKERVMS 341

Query: 227 KAPYQM 232
            APY +
Sbjct: 342 TAPYNI 347


>GSVIVT01008453001 assembled CDS
          Length = 368

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 58/132 (43%), Gaps = 32/132 (24%)

Query: 124 PVPA-QMTIFYGGRVMVFDDFPADKAKEIFALAAKG---SSNTT---------------- 163
           P PA Q+TIFY G V VFD    ++A+ I  LA      S NTT                
Sbjct: 199 PGPATQLTIFYAGSVNVFDGISPEQAQAIMLLAGNVPPVSPNTTLPASQGQGPIIMPSGG 258

Query: 164 NGFL-----TSLP----TASAMDKSRTPSVSNDAGGEGLQLRPQDTNGSDLPIARRASLH 214
           +GF+     TS P    T  A+  +  P   N     G       T    +P AR+ASL 
Sbjct: 259 DGFMGNQAHTSQPGSGKTKGALTSTNQPEPPNVVTSLGSTT---PTYIPAVPQARKASLA 315

Query: 215 RFLEKRKERASS 226
           RFLEKRKER  +
Sbjct: 316 RFLEKRKERCQT 327