Jatropha Genome Database

JcCA0029721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029721.10 - phase: 0 /pseudo/partial
         (454 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036134001 assembled CDS                                       595   e-170
GSVIVT01033531001 assembled CDS                                       291   4e-79
GSVIVT01036649001 assembled CDS                                       289   2e-78
GSVIVT01033632001 assembled CDS                                       285   2e-77
GSVIVT01011929001 assembled CDS                                       278   3e-75
GSVIVT01008960001 assembled CDS                                       240   9e-64
GSVIVT01022200001 assembled CDS                                       239   3e-63
GSVIVT01022365001 assembled CDS                                        55   5e-08
GSVIVT01021229001 assembled CDS                                        50   3e-06

>GSVIVT01036134001 assembled CDS
          Length = 500

 Score =  595 bits (1535), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 310/436 (71%), Positives = 336/436 (77%), Gaps = 16/436 (3%)

Query: 1   MASHGIGGTGLSDSGPSNHHHHLSYATLHGINTPSTSFINQEGSAFDFGELEEAIVLQGV 60
           MA+H +G T LS S PSNHH  L YA LHGI+ P+ +FINQEGSAFDFGELEEAIVLQGV
Sbjct: 1   MATHRVGETNLSGSAPSNHH--LPYAVLHGISPPAATFINQEGSAFDFGELEEAIVLQGV 58

Query: 61  KLRNDEAKAPFFTVTGRPAATLEMFPSWPMRFQQTTPRVGSSKSGGESTDSGSAVNTLSS 120
           K+RNDEAK   FT   RPAATLEMFPSWPMRFQQT  + GSSKSGGESTDSGSAVNTLSS
Sbjct: 59  KIRNDEAKTSLFT--ARPAATLEMFPSWPMRFQQT--QRGSSKSGGESTDSGSAVNTLSS 114

Query: 121 KAEAQLDPESPVSKKASSSDHXXXXXXXXXXXXXXIEMASDTSRTGGGPPSELNPSSAKP 180
           +AEAQL+PESP+S K +S                 +EMASDTSR  G  PSE  P+++KP
Sbjct: 115 RAEAQLEPESPISIKPTSDHQAFDQKHLQFQHQQQLEMASDTSRLAG--PSESQPAASKP 172

Query: 181 PQEKRKG--STSEKHLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQ 238
           P EKRKG  STSEK LDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQ
Sbjct: 173 PPEKRKGAGSTSEKTLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQ 232

Query: 239 RARQQXXXXXXXXXXXXN------ISSGAAIFDMEYARWLEDDQRHMSELRTGLQAHLTD 292
           RAR Q                   IS GAAIFDMEYARWLEDD RHMSELRTGLQAHL D
Sbjct: 233 RARSQGLFLGGGGGGGGGGGAGGIISPGAAIFDMEYARWLEDDHRHMSELRTGLQAHLLD 292

Query: 293 VDLRIIVDRYISHYDEIFRLKGVAAKSDVFHLITGMWSTPAERCFLWMGGFKPSELIKML 352
            DLR+IVD Y+SHYDEIFRLKGVAAKSDVFHLITGMW+TPAERCFLWMGGF+PS+LIKML
Sbjct: 293 GDLRVIVDGYLSHYDEIFRLKGVAAKSDVFHLITGMWTTPAERCFLWMGGFRPSDLIKML 352

Query: 353 TSQLDPLTEQQIMGIYXXXXXXXXXXXXXFQGLEQLQQSLVDTIASGPVIDGMQQMAVAL 412
            +QLDPLTEQQ+MGIY              QG EQLQQSL+DTIASG V D M  M +AL
Sbjct: 353 IAQLDPLTEQQVMGIYGLQHSSQQAEEALSQGQEQLQQSLIDTIASGSVADDMAHMVMAL 412

Query: 413 GKLANLEGFVRQVKTI 428
           G+L NLEGFVRQ   +
Sbjct: 413 GQLTNLEGFVRQADNL 428


>GSVIVT01033531001 assembled CDS
          Length = 431

 Score =  291 bits (746), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 180/429 (41%), Positives = 235/429 (54%), Gaps = 65/429 (15%)

Query: 37  SFINQEGSAFDFGELEEAIVLQGVKLRNDEAKAPFFTVTGRPAATLEMFPSWPMRFQQTT 96
           +F++++  A+D GEL++A+ L          +        RP  TL +FPS PM  +   
Sbjct: 12  NFLSKDPGAYDLGELDQALFLYLDGHDPSAIQEQRHNSDIRPP-TLNIFPSQPMHVE--- 67

Query: 97  PRVGSSKSGGESTDSGSAVNTLSSKAEAQLDPESPVSKKASSSDHXXXXXXXXXXXXXXI 156
           P + +S      + SGS              P  P                        +
Sbjct: 68  PPIKASLGLVSPSTSGSK------------RPSEP-----------------------SM 92

Query: 157 EMASDTSRTGGGPPSELNPSSAKPPQEKRKGSTSE------KHLDAKTLRRLAQNREAAR 210
           E+A+  +      P +  P+ A   +  RKG TS       K  D KTLRRLAQNREAAR
Sbjct: 93  ELANPKNDANVSGPDQ--PAKAVKREGNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAAR 150

Query: 211 KSRLRKKAYVQQLESSRIKLTQLEQDLQRARQQ------------XXXXXXXXXXXXNIS 258
           KSRLRKKAYVQQLESSRIKLTQLEQ+LQRAR Q                        N+S
Sbjct: 151 KSRLRKKAYVQQLESSRIKLTQLEQELQRARAQGLIFTGGGLLGGGGGDQNAPVAVTNLS 210

Query: 259 SGAAIFDMEYARWLEDDQRHMSELRTGLQAHLTDVDLRIIVDRYISHYDEIFRLKGVAAK 318
           S AA+FDMEY RWLE+  R M ELR  +Q HL + DLR+ VD  I+H+D +  LK + AK
Sbjct: 211 SDAAVFDMEYGRWLEEHHRLMCELRAAVQEHLPENDLRLFVDNCIAHFDGMMNLKSMVAK 270

Query: 319 SDVFHLITGMWSTPAERCFLWMGGFKPSELIKMLTSQLDPLTEQQIMGIYXXXXXXXXXX 378
           SDVFHL++GMW TPAERCF+WMGGF+PSE+IK++ +Q++PLTEQQI+GI           
Sbjct: 271 SDVFHLVSGMWKTPAERCFMWMGGFRPSEVIKIILNQIEPLTEQQILGICGLQQSTQEAE 330

Query: 379 XXXFQGLEQLQQSLVDTIASGPV------IDGMQQMAVALGKLANLEGFVRQVKTIIITY 432
               QGLE L QSL DTIAS  +       + M QMA+A+ KL+ LEGFVRQ   +    
Sbjct: 331 EALSQGLEALNQSLSDTIASDSLSAPPNMANYMGQMAIAMNKLSTLEGFVRQADNLRHQT 390

Query: 433 IILVQELIS 441
           I  +Q++++
Sbjct: 391 IHRLQQVLT 399


>GSVIVT01036649001 assembled CDS
          Length = 469

 Score =  289 bits (740), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/272 (54%), Positives = 190/272 (69%), Gaps = 19/272 (6%)

Query: 167 GGPPSELNPSSAKPPQEKRKGSTSEKHLDAKTLRRLAQNREAARKSRLRKKAYVQQLESS 226
           G P S +   S+   ++K          D KTLRRLAQNREAARKSRLRKKAYVQQLESS
Sbjct: 163 GQPASNMASDSSDRSKDKN---------DQKTLRRLAQNREAARKSRLRKKAYVQQLESS 213

Query: 227 RIKLTQLEQDLQRARQQXXXXXXXXXXXXNIS-SGAAIFDMEYARWLEDDQRHMSELRTG 285
           R+KLTQLEQ+LQRARQQ            ++S +GA  FD+EYARWLE+  R ++ELR+ 
Sbjct: 214 RMKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSA 273

Query: 286 LQAHLTDVDLRIIVDRYISHYDEIFRLKGVAAKSDVFHLITGMWSTPAERCFLWMGGFKP 345
           + +H +D +LR+IVD  ++HYD+IFRLKGVAAK+DVFHL++GMW TPAERCFLW+GGF+ 
Sbjct: 274 VNSHASDAELRVIVDNIMAHYDDIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRS 333

Query: 346 SELIKMLTSQLDPLTEQQIMGIYXXXXXXXXXXXXXFQGLEQLQQSLVDTIASGP----- 400
           SEL+K+L +QL+PLTEQQ++GI               QG+E LQQSL +T++SG      
Sbjct: 334 SELLKLLVNQLEPLTEQQLLGIGNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSG 393

Query: 401 ----VIDGMQQMAVALGKLANLEGFVRQVKTI 428
               V + M QMA+A+GKL  LEGF+RQ   +
Sbjct: 394 SSGNVANYMGQMAMAMGKLGTLEGFIRQADNL 425


>GSVIVT01033632001 assembled CDS
          Length = 451

 Score =  285 bits (730), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 140/250 (56%), Positives = 181/250 (72%), Gaps = 10/250 (4%)

Query: 189 TSEKHLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARQQXXXXX 248
           + EK  D KTLRRLAQNREAARKSRLRKKAYVQQLE+SR+KLTQLEQ+LQRARQQ     
Sbjct: 158 SKEKAGDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRMKLTQLEQELQRARQQGIFIS 217

Query: 249 XXXXXXXNIS-SGAAIFDMEYARWLEDDQRHMSELRTGLQAHLTDVDLRIIVDRYISHYD 307
                  ++S +GA  FD+EYARWLE+  R ++ELR+ + +H +D +LR IVD   +H+D
Sbjct: 218 SSGDQSHSMSGNGALAFDVEYARWLEEHNRQINELRSAVNSHASDTELRTIVDNVTAHFD 277

Query: 308 EIFRLKGVAAKSDVFHLITGMWSTPAERCFLWMGGFKPSELIKMLTSQLDPLTEQQIMGI 367
           +IFRLKG+AAK+DVFH+++GMW TPAERCF+W+GGF+ SE++K+L +QL+PLTEQQ+M I
Sbjct: 278 DIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSEVLKLLVNQLEPLTEQQLMSI 337

Query: 368 YXXXXXXXXXXXXXFQGLEQLQQSLVDTIA---------SGPVIDGMQQMAVALGKLANL 418
           Y              QG+E LQQSL +T+          SG V + M QMA+A+GKL  L
Sbjct: 338 YNLQQSSQQAEDALSQGMEALQQSLAETLTSGSPGPSGSSGNVANYMGQMAMAMGKLGTL 397

Query: 419 EGFVRQVKTI 428
           EGF+RQ   +
Sbjct: 398 EGFLRQADNL 407


>GSVIVT01011929001 assembled CDS
          Length = 453

 Score =  278 bits (712), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 141/257 (54%), Positives = 183/257 (71%), Gaps = 15/257 (5%)

Query: 183 EKRKGSTSEKHLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARQ 242
           ++ KG T     D KTLRRLAQNREAARKSRLRKKAYVQQLE S++KLTQLEQ+LQRARQ
Sbjct: 157 DQSKGKTG----DQKTLRRLAQNREAARKSRLRKKAYVQQLECSQLKLTQLEQELQRARQ 212

Query: 243 QXXXXXXXXXXXXNIS---SGAAIFDMEYARWLEDDQRHMSELRTGLQAHLTDVDLRIIV 299
           Q            + S   +GA  FDM+YARWL++ QR +++LR+ + +H+ D +LRI+V
Sbjct: 213 QGVFIATGFSGDQSHSMGGNGALAFDMDYARWLDEHQRLINDLRSAVNSHVGDNELRILV 272

Query: 300 DRYISHYDEIFRLKGVAAKSDVFHLITGMWSTPAERCFLWMGGFKPSELIKMLTSQLDPL 359
           D  ++HYDEIFRLK + AKSDVFH+++GMW TPAERCF+W+GGF+ SEL+K+L +QL+PL
Sbjct: 273 DGVMAHYDEIFRLKSMGAKSDVFHMLSGMWKTPAERCFMWLGGFRSSELLKILGNQLEPL 332

Query: 360 TEQQIMGIYXXXXXXXXXXXXXFQGLEQLQQSLVDTIA--------SGPVIDGMQQMAVA 411
           T+QQ+MGI               QG+E LQQSLV+T++        SG V D M QMA+A
Sbjct: 333 TDQQLMGICNLQQSSQQAEDALSQGMEALQQSLVETLSSNSLGPAGSGNVADYMGQMAIA 392

Query: 412 LGKLANLEGFVRQVKTI 428
           +GKLA LE F+ Q   +
Sbjct: 393 MGKLATLENFLHQADLL 409


>GSVIVT01008960001 assembled CDS
          Length = 361

 Score =  240 bits (613), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 127/260 (48%), Positives = 170/260 (65%), Gaps = 16/260 (6%)

Query: 173 LNPSSAKPPQEKRKGSTSEKHLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQ 232
           L PS    P+++    T++K     T RRLAQNREAARKSRLRKKAYVQQLE+SR+KLT+
Sbjct: 62  LGPSGNSQPEDR----TTDK-----TQRRLAQNREAARKSRLRKKAYVQQLETSRLKLTE 112

Query: 233 LEQDLQRARQQX-----XXXXXXXXXXXNISSGAAIFDMEYARWLEDDQRHMSELRTGLQ 287
           LEQ+L+RARQQ                  I+SG A F+MEY  W+E+  R   ELR  LQ
Sbjct: 113 LEQELERARQQGLYIGGSLDTTRVGFSGTINSGIATFEMEYGHWVEEQHRQNCELRNALQ 172

Query: 288 AHLTDVDLRIIVDRYISHYDEIFRLKGVAAKSDVFHLITGMWSTPAERCFLWMGGFKPSE 347
           AH+TD++LRI+V+  ++HY E+FR+K  AAK+DVF+L++GMW T AER FLW+GGF+PSE
Sbjct: 173 AHVTDIELRILVESALNHYYELFRMKADAAKADVFYLMSGMWRTSAERFFLWIGGFRPSE 232

Query: 348 LIKMLTSQLDPLTEQQIMGIYXXXXXXXXXXXXXFQGLEQLQQSLVDTIASGPVIDG--M 405
           L+ +L    +PLT+QQ++ +               QG+++LQQ+L  +I + PV  G   
Sbjct: 233 LLNVLMPHFEPLTDQQLLDVCNLRQSSQQAEDALSQGMDKLQQTLAQSIVTDPVGAGNYR 292

Query: 406 QQMAVALGKLANLEGFVRQV 425
            QMA A+ KL  LE FV Q 
Sbjct: 293 SQMAEAVEKLDALESFVNQA 312


>GSVIVT01022200001 assembled CDS
          Length = 349

 Score =  239 bits (609), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/273 (46%), Positives = 172/273 (63%), Gaps = 21/273 (7%)

Query: 159 ASDTSRTGGGPPSELNPSSAKPPQEKRKGSTSEKHLDAKTLRRLAQNREAARKSRLRKKA 218
           + DTS    GP  + +  + KP                K  RRLAQNREAARKSRLRKKA
Sbjct: 41  SEDTSHGTPGPSDKYDQEATKPVD--------------KVQRRLAQNREAARKSRLRKKA 86

Query: 219 YVQQLESSRIKLTQLEQDLQRARQQXXXX-----XXXXXXXXNISSGAAIFDMEYARWLE 273
           YVQ+LESSR+KL QLEQ+L+RARQQ                  ++SG A F+MEY  W+E
Sbjct: 87  YVQELESSRVKLMQLEQELERARQQGLYIGGGLDAGHLGFSGAVNSGIAAFEMEYGHWVE 146

Query: 274 DDQRHMSELRTGLQAHLTDVDLRIIVDRYISHYDEIFRLKGVAAKSDVFHLITGMWSTPA 333
           +    + ELRT L AH++DV+LRI+V+  ++HY  +FR+K  AAK+DVF++++GMW T A
Sbjct: 147 EQSSQICELRTALHAHISDVELRILVETAMNHYFNLFRMKANAAKADVFYMMSGMWKTSA 206

Query: 334 ERCFLWMGGFKPSELIKMLTSQLDPLTEQQIMGIYXXXXXXXXXXXXXFQGLEQLQQSLV 393
           ER FLW+GGF+PSEL+K+L  QLDPLT+QQI+ +               QG+E+LQQ L 
Sbjct: 207 ERFFLWIGGFRPSELLKVLVPQLDPLTDQQILDVCNLRQSCQQAEDALTQGMEKLQQILA 266

Query: 394 DTIASGPVIDG--MQQMAVALGKLANLEGFVRQ 424
           + +A+G + +G  + Q+A AL KL  +  FV Q
Sbjct: 267 EAVAAGQLGEGSYIPQLATALEKLEAVVSFVNQ 299


>GSVIVT01022365001 assembled CDS
          Length = 255

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 264 FDMEYARWLEDDQRHMSEL----RTGLQAHLTDVDLRIIVDRYISHYDEIFRLKGVAAKS 319
           F   +  WL +  +H+ EL    R       +D  L  +V+R +SHY   +  K ++ + 
Sbjct: 11  FHKFFESWLTEQNQHLQELISASRNNQHTDDSDQILCPLVERVVSHYHNYYHAKSLSTRD 70

Query: 320 DVFHLITGMWSTPAERCFLWMGGFKPSELIKMLTSQ 355
           ++  ++T  W +  E  FLW+GG++PS    +L S+
Sbjct: 71  NILSMLTPPWRSLLEDAFLWVGGWRPSVAFHLLYSK 106


>GSVIVT01021229001 assembled CDS
          Length = 211

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 270 RWLEDDQRHMSELRTGLQAHLTDVDLRI--------IVDRYISHYDEIFRLKGVAAKSDV 321
           R++E  ++ M +L   LQ  L  V   I        +V R  +H  E +  K  AA  DV
Sbjct: 8   RFIEFYEKWMCQLEENLQ-RLLKVSREIPHRTEREALVSRVTTHLKEYYNAKWAAAHEDV 66

Query: 322 FHLITGMWSTPAERCFLWMGGFKPSELIKMLTS 354
               + +W +P E  +LW+ G+KPS   +++ S
Sbjct: 67  LAFFSPVWLSPLENAYLWVTGWKPSTAFRLIES 99