Jatropha Genome Database

JcCA0029581.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029581.30 - phase: 2 /partial
         (60 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036134001 assembled CDS                                       116   2e-27
GSVIVT01022200001 assembled CDS                                        56   3e-09
GSVIVT01008960001 assembled CDS                                        55   7e-09
GSVIVT01033531001 assembled CDS                                        53   3e-08
GSVIVT01033632001 assembled CDS                                        50   2e-07
GSVIVT01011929001 assembled CDS                                        50   2e-07
GSVIVT01036649001 assembled CDS                                        50   3e-07

>GSVIVT01036134001 assembled CDS
          Length = 500

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 56/60 (93%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRESMMGDENSCQTTSDLQMVQPPQNHFTNF 60
           TVRQAARCFLVIGEYYGRLRALSSLWASRPRE+MMGDE+SCQTT+DL MVQ   +HFTNF
Sbjct: 441 TVRQAARCFLVIGEYYGRLRALSSLWASRPREAMMGDEHSCQTTTDLHMVQSSHSHFTNF 500


>GSVIVT01022200001 assembled CDS
          Length = 349

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 28/32 (87%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRE 32
           TVRQAAR  L +GEY+ RLRALSSLWA+RPRE
Sbjct: 316 TVRQAARGLLALGEYFQRLRALSSLWATRPRE 347


>GSVIVT01008960001 assembled CDS
          Length = 361

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 27/32 (84%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRE 32
           T RQAAR  L +GEY+ RLRALSSLWA+RPRE
Sbjct: 328 TTRQAARGLLALGEYFHRLRALSSLWAARPRE 359


>GSVIVT01033531001 assembled CDS
          Length = 431

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRE 32
           T RQAARC L + EY+ RLRALSSLW +RPR+
Sbjct: 399 TTRQAARCLLAMAEYFHRLRALSSLWMARPRQ 430


>GSVIVT01033632001 assembled CDS
          Length = 451

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRE 32
           T RQ+AR  L I +Y+ RLRALSSLW +RPRE
Sbjct: 420 TTRQSARALLAINDYFSRLRALSSLWLARPRE 451


>GSVIVT01011929001 assembled CDS
          Length = 453

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 25/32 (78%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRE 32
           T RQAAR  LVI +Y  RLRALSSLW +RPR+
Sbjct: 422 TTRQAARALLVISDYMSRLRALSSLWLARPRD 453


>GSVIVT01036649001 assembled CDS
          Length = 469

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRE 32
           T RQ+AR  L I +Y+ RLRALSSLW +RPRE
Sbjct: 438 TTRQSARALLAIHDYFSRLRALSSLWLARPRE 469