Jatropha Genome Database

JcCA0029581.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029581.20 - phase: 0 /pseudo/partial
         (212 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023121001 assembled CDS                                       306   4e-84

>GSVIVT01023121001 assembled CDS
          Length = 282

 Score =  306 bits (784), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 147/180 (81%), Positives = 163/180 (90%), Gaps = 1/180 (0%)

Query: 33  KIVIVMGKSKKPRSSFPKGSDPAPPRITSNIKQNLQFLKLWKEFQKRKSSTPKPATSYRR 92
           KIV    KS +  S + KGS+  PPRIT+N+KQNLQFLKLWKEFQKRKSSTPKPATSYRR
Sbjct: 14  KIVARSKKSSQQPSPY-KGSESTPPRITTNVKQNLQFLKLWKEFQKRKSSTPKPATSYRR 72

Query: 93  KKVEKEELPEDTELYRDPTLSLYYTNQILDNAVPVLLVDGYNVCGYWAKLKKHFMNGRLD 152
           KKV+K++LPEDTELY DPT++LYYTNQ +D AVPVLLVDGYNVCGYW KLKKHF+NGRLD
Sbjct: 73  KKVQKDDLPEDTELYHDPTVTLYYTNQGIDTAVPVLLVDGYNVCGYWMKLKKHFVNGRLD 132

Query: 153 IARQKLIDELVTFSMLRDVKVVVVFDAMMSGLPTHKETFAGVDVVFSGESCADAWIXKEV 212
           IARQKLIDELVTFS+LR+VKVVVVFDAMMSGLPTHKE FAG+DVV+SGESCADAWI KEV
Sbjct: 133 IARQKLIDELVTFSLLREVKVVVVFDAMMSGLPTHKENFAGIDVVYSGESCADAWIEKEV 192