Jatropha Genome Database

JcCA0029581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029581.10 - phase: 1 /TE/partial
         (240 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015124001 assembled CDS                                       216   9e-57
GSVIVT01037631001 assembled CDS                                       214   3e-56
GSVIVT01034745001 assembled CDS                                       194   3e-50
GSVIVT01011363001 assembled CDS                                       181   4e-46
GSVIVT01038695001 assembled CDS                                       127   4e-30
GSVIVT01028612001 assembled CDS                                        89   1e-18
GSVIVT01000436001 assembled CDS                                        70   9e-13
GSVIVT01036343001 assembled CDS                                        52   2e-07

>GSVIVT01015124001 assembled CDS
          Length = 780

 Score =  216 bits (549), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 143/202 (70%)

Query: 11  STPIFVGENYQLWAVKMKAYLQAYDLREHVETEKEIPPLPSNLTMVQIKNHSEEXXXXXX 70
           + P+F G NYQ+WAV+M+AYL A DL E V  E E+PPL  N T+ QIK H+E       
Sbjct: 11  TPPMFDGINYQVWAVRMEAYLDASDLWEAVSEEYEVPPLSDNPTIAQIKLHNERRQRKSK 70

Query: 71  XXXCLHSSVSDIIFTSIMTCETTKEIWDSLKNEYQGNEQTKLMQVLNLKREFEMQKMKTS 130
               L + VS  IFT IMT +TT EIW+ LK EY+GNE+ K MQVLNL REFEMQ+MK S
Sbjct: 71  VKASLFAVVSSTIFTRIMTLKTTNEIWNFLKKEYEGNERVKGMQVLNLIREFEMQRMKES 130

Query: 131 GGVKXYVNNLMSIVNKIRLFGEEFPERRVVEKILISLPEKFESKISSLEDTKNLSEISVG 190
             +K Y + L+SIVNK+RL G +F   R+V+KI I++ EKFE+ ISSLE++K++S I++ 
Sbjct: 131 ETIKDYSDKLLSIVNKVRLLGVDFSNSRIVQKIFITVSEKFENTISSLENSKDVSSITLA 190

Query: 191 ELTNALQAVEQRRAFREDNTIE 212
           EL NALQA EQRR  R++ ++E
Sbjct: 191 ELLNALQAQEQRRLMRQEGSVE 212


>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/242 (46%), Positives = 155/242 (64%), Gaps = 15/242 (6%)

Query: 14  IFVGENYQLWAVKMKAYLQAYDLREHVETEKEIPPLPSNLTMVQIKNHSEEXXXXXXXXX 73
           I  G+NY+ WAV+M  +LQA D+ E VE   E+PPL +N T+ Q+K H E          
Sbjct: 731 ILDGDNYETWAVRMTVHLQALDVWEAVEENYEVPPLGANPTVAQMKLHKERRTRKAKAKA 790

Query: 74  CLHSSVSDIIFTSIMTCETTKEIWDSLKNEYQGNEQTKLMQVLNLKREFEMQKMKTSGGV 133
           CL ++VS  IF  IM  ++  EIW+ LK EY+G+E+ K MQV+NL REFEM+KM+ S  V
Sbjct: 791 CLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDAV 850

Query: 134 KXYVNNLMSIVNKIRLFGEEFPERRVVEKILISLPEKFESKISSLEDTKNLSEISVGELT 193
           K Y   L+SI +K+RL G+EF   ++V+KIL++LPEK+E+ ISSLE++K+LS IS+ EL 
Sbjct: 851 KDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKDLSTISLTELL 910

Query: 194 NALQAVEQRRAFREDNTIEAALVAK------------TSNKFLSKRRK---FPPCGICKK 238
           ++L+AVEQRR  R+ +T E A  A+             +NK     +K   FPPC  CKK
Sbjct: 911 HSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKVNNNKSCGNNQKNGVFPPCPHCKK 970

Query: 239 DN 240
            N
Sbjct: 971 TN 972


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 102/250 (40%), Positives = 149/250 (59%), Gaps = 19/250 (7%)

Query: 10  SSTPIFVGENYQLWAVKMKAYLQAYDLREHVETEKEIPPLPSNLTMVQIKNHSEEXXXXX 69
           S   +F GE+Y +WAVKM+ YL++  L   V +E + PPL +N T+ Q+K + EE     
Sbjct: 9   SVISVFNGEHYHIWAVKMRFYLRSQGLWNVVMSEADPPPLGANPTVAQMKAYEEEKLKKD 68

Query: 70  XXXXCLHSSVSDIIFTSIMTCETTKEIWDSLKNEYQGNEQTKLMQVLNLKREFEMQKMKT 129
               CLHS ++D IFT IM  ET K +WD L+ E++G+E+ K +++L LKREFE+ KMK 
Sbjct: 69  KAITCLHSGLTDHIFTKIMNLETPKLVWDKLQGEFEGSERFKTVRLLKLKREFELMKMKD 128

Query: 130 SGGVKXYVNNLMSIVNKIRLFGEEFPERRVVEKILISLPEKFESKISSLEDTKNLSEISV 189
              VK Y   LM +VN+IRL GE F +++VVEKI++ +P+KFE+KIS++E++ +L  +++
Sbjct: 129 DEFVKDYSGRLMDVVNQIRLLGEAFTDQKVVEKIMVLVPQKFEAKISAIEESCDLQTLTI 188

Query: 190 GELTNALQAVEQRRAFREDNTIEAALVAKTSNK-------------------FLSKRRKF 230
            ELT+ L A EQR   R D   E A  A    K                     S++ KF
Sbjct: 189 VELTSKLHAQEQRVLMRGDEATEGAFQANHEGKNSGNLQGKKFFKNNKEKAEGSSRKGKF 248

Query: 231 PPCGICKKDN 240
           P C  C++ N
Sbjct: 249 PSCSHCRRTN 258


>GSVIVT01011363001 assembled CDS
          Length = 1752

 Score =  181 bits (458), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 84/171 (49%), Positives = 118/171 (69%)

Query: 14  IFVGENYQLWAVKMKAYLQAYDLREHVETEKEIPPLPSNLTMVQIKNHSEEXXXXXXXXX 73
           I  G+NY+ WAV+M  +LQA D+ E VE   E+PPL +N T+ Q+K H E          
Sbjct: 12  ILDGDNYETWAVRMTVHLQALDVWEAVEENYEVPPLGANPTVAQMKLHKERRTRKAKAKA 71

Query: 74  CLHSSVSDIIFTSIMTCETTKEIWDSLKNEYQGNEQTKLMQVLNLKREFEMQKMKTSGGV 133
           CL ++VS  IF  IM  ++  EIW+ LK EY+G+E+ K MQV+NL REFEM+KM+ S  V
Sbjct: 72  CLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDAV 131

Query: 134 KXYVNNLMSIVNKIRLFGEEFPERRVVEKILISLPEKFESKISSLEDTKNL 184
           K Y   L+SI +K+RL G+EF   ++V+KIL++LPEK+E+ ISSLE++K+L
Sbjct: 132 KDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKDL 182


>GSVIVT01038695001 assembled CDS
          Length = 740

 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/143 (47%), Positives = 92/143 (64%), Gaps = 15/143 (10%)

Query: 113 MQVLNLKREFEMQKMKTSGGVKXYVNNLMSIVNKIRLFGEEFPERRVVEKILISLPEKFE 172
           MQV+NL REFEM+KM+ S  VK Y   L+SI +K+RL G+EF   ++V+KIL++LPEK+E
Sbjct: 1   MQVMNLIREFEMKKMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYE 60

Query: 173 SKISSLEDTKNLSEISVGELTNALQAVEQRRAFREDNTIEAALVAKTSNKFLSKRRK--- 229
           + ISSLE++K+LS IS+ EL ++L+AVEQRR  R+ +T E A  A+       K  K   
Sbjct: 61  AIISSLENSKDLSTISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKVNN 120

Query: 230 ------------FPPCGICKKDN 240
                       FPPC  CKK N
Sbjct: 121 KKSCGNNQKNGVFPPCPHCKKTN 143


>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 103/185 (55%), Gaps = 4/185 (2%)

Query: 20  YQLWAVKMKAYLQAYDLREHVETEKEIPPLPSN--LTMVQIKNHSEEXXXXXXXXXCLHS 77
           Y  WA+ M+ +L++ +    V     +P +  +  LT  Q K+  ++          L  
Sbjct: 43  YDHWAMLMENFLRSKEYWGLVVNG--VPAVAEDAVLTDAQRKHIEDQQLKDLKAKNYLFQ 100

Query: 78  SVSDIIFTSIMTCETTKEIWDSLKNEYQGNEQTKLMQVLNLKREFEMQKMKTSGGVKXYV 137
           ++   I  +I+  +TTK+IWDS+K ++QG  + K   +  L++EF++  MK+   V  Y 
Sbjct: 101 ALDRSILETILNKKTTKDIWDSMKQKFQGTTRVKRGNLQALRKEFKILHMKSGETVNEYF 160

Query: 138 NNLMSIVNKIRLFGEEFPERRVVEKILISLPEKFESKISSLEDTKNLSEISVGELTNALQ 197
           +  ++I NK+++ GE+     VVEKIL S+  KF+  + S+E++K+L  +++ EL ++L 
Sbjct: 161 SRTLAIANKMKVNGEDKGNTAVVEKILRSMTSKFDYVVCSIEESKDLDTLTIDELQSSLL 220

Query: 198 AVEQR 202
             EQR
Sbjct: 221 VHEQR 225


>GSVIVT01000436001 assembled CDS
          Length = 95

 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 47/82 (57%)

Query: 13 PIFVGENYQLWAVKMKAYLQAYDLREHVETEKEIPPLPSNLTMVQIKNHSEEXXXXXXXX 72
          P+F GE+Y +W  KM+ YL++  L   V  E + PPL +N T+ Q+K + EE        
Sbjct: 12 PVFNGEHYHIWVDKMRFYLRSQGLWNVVMFEADPPPLGANPTVAQMKAYEEEKLKKDKAI 71

Query: 73 XCLHSSVSDIIFTSIMTCETTK 94
           CLHS + D IFT IM  ET K
Sbjct: 72 TCLHSGLVDHIFTKIMDLETPK 93


>GSVIVT01036343001 assembled CDS
          Length = 1201

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 9/219 (4%)

Query: 18  ENYQLWAVKMKAYLQAYDLREHVETEKEIPPLPSNLTMVQIKNHSEEXXXXXXXXXCLHS 77
           +N+ LW  +M+  + A    +H+E  +  PP   +   V   +              ++S
Sbjct: 136 DNHILWHTQMENVIYANGFEDHIEGLRPCPPKTISTGEVN-PDFLVWRRYDRMILSWIYS 194

Query: 78  SVSDIIFTSIMTCETTKEIWDSLKNEYQGNEQTKLMQVLNLKREFEMQKMKTSGGVKXYV 137
           S++  +   I+  +T+ E W +L+  +  + + + MQ   L+  F+  K K S  +  Y+
Sbjct: 195 SLTPDVMGQIVGLQTSHEAWTALQRSFSASTKARTMQ---LRLAFQTNK-KGSLTMMEYI 250

Query: 138 NNLMSIVNKIRLFGEEFPERRVVEKILISLPEKFESKISSLEDTKNLSEISVGELTNALQ 197
             L  I + +   GE  PE+  + ++L  L  ++   I+SL  T    +I +  + + L 
Sbjct: 251 QKLKHISDSLAAIGEPVPEKDQILQLLSGLGAEYNPIIASL--TTRDDDIQLHAVHSILL 308

Query: 198 AVEQRRAFREDNTIEAALVA--KTSNKFLSKRRKFPPCG 234
             EQR   +   T E  L+A   T N+    + K P  G
Sbjct: 309 THEQRLPLQTTPTEEDLLIANFATHNRPRRSQSKKPSQG 347