Jatropha Genome Database

JcCA0029471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029471.10 + phase: 1 /partial
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032427001 assembled CDS                                       148   4e-37
GSVIVT01012669001 assembled CDS                                        94   2e-20

>GSVIVT01032427001 assembled CDS
          Length = 324

 Score =  148 bits (374), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 76/93 (81%)

Query: 12  QEGLEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIKDIDNIYYETE 71
           QEG E EITRR            KD ER+GWHP+TYKFSDATP LI++IKDIDNIYYETE
Sbjct: 219 QEGFEEEITRRSLTHSSWDLSSSKDRERKGWHPLTYKFSDATPMLIQSIKDIDNIYYETE 278

Query: 72  YRKEWCSSKGKPSTCFLFARKFTRPAALRLLNM 104
           YR+EWC+SKGKP+ CFLFARKFTRPAALRLLNM
Sbjct: 279 YRREWCTSKGKPAPCFLFARKFTRPAALRLLNM 311


>GSVIVT01012669001 assembled CDS
          Length = 380

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 15  LEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIKDIDNIYYETEYRK 74
           LE E+ RR            K  ER GWHP+T+ +++A P  IK IKD++++YYETE+R 
Sbjct: 276 LESELERRTLTYTEWNLSVTKM-EREGWHPITFSYANAGPQRIKEIKDVNHVYYETEFRT 334

Query: 75  EWCSSKGKPSTCFLFARKFTRPAALRLLN 103
           EWC +      CFLFARKF+R AA+RLL+
Sbjct: 335 EWCRANSTSVPCFLFARKFSRGAAMRLLS 363