Jatropha Genome Database

JcCA0029371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029371.10 + phase: 0 /pseudo/partial
         (178 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013241001 assembled CDS                                       206   4e-54
GSVIVT01018382001 assembled CDS                                       201   1e-52

>GSVIVT01013241001 assembled CDS
          Length = 397

 Score =  206 bits (525), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/104 (94%), Positives = 101/104 (97%)

Query: 74  GDVKGKVAVMVDDMIDTAGTITKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQE 133
           GDVKGKVAVMVDDMIDTAGTITKGAALLHQEGAREVYAC THAVFSPPAIERL+SGLFQE
Sbjct: 293 GDVKGKVAVMVDDMIDTAGTITKGAALLHQEGAREVYACCTHAVFSPPAIERLTSGLFQE 352

Query: 134 VIITNTIPVAEQNYFPQLTVLSVANLLGETIWRVHDDCSVSSIF 177
           VIITNTIP  E+NYFPQLTVLSVANLLGETIWR+HDDCSVSSIF
Sbjct: 353 VIITNTIPTQEKNYFPQLTVLSVANLLGETIWRIHDDCSVSSIF 396


>GSVIVT01018382001 assembled CDS
          Length = 403

 Score =  201 bits (511), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/99 (96%), Positives = 97/99 (97%)

Query: 74  GDVKGKVAVMVDDMIDTAGTITKGAALLHQEGAREVYACSTHAVFSPPAIERLSSGLFQE 133
           GDVKGKVAVMVDDMIDTAGTI KGAALLHQEGAREVYACSTHAVFSPPAI+RLSSGLFQE
Sbjct: 293 GDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACSTHAVFSPPAIQRLSSGLFQE 352

Query: 134 VIITNTIPVAEQNYFPQLTVLSVANLLGETIWRVHDDCS 172
           VIITNTIPV EQNYFPQLTVLSVANLLGETIWRVHDDCS
Sbjct: 353 VIITNTIPVLEQNYFPQLTVLSVANLLGETIWRVHDDCS 391