Jatropha Genome Database

JcCA0029051.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029051.30 + phase: 0 /partial
         (354 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025279001 assembled CDS                                       221   3e-58
GSVIVT01025457001 assembled CDS                                       116   1e-26
GSVIVT01012117001 assembled CDS                                        52   6e-07
GSVIVT01031411001 assembled CDS                                        50   2e-06
GSVIVT01025216001 assembled CDS                                        49   3e-06

>GSVIVT01025279001 assembled CDS
          Length = 979

 Score =  221 bits (564), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 145/294 (49%), Positives = 174/294 (59%), Gaps = 51/294 (17%)

Query: 58  TMADSPRITLRSPSKKPKQTPPLSSICLTPRTPQVVDPPXXXXXXXXXXXDQITTPQKCA 117
            MA++PR +  SP K  K +P   S  + P+TPQ V                  TP + +
Sbjct: 186 VMAETPRKSFHSPRKAHKPSP---STPIIPQTPQTV------------------TPSRSS 224

Query: 118 SQLKKPIEDSLKIRRNSRKNGSIKTPESKRDTESTXXXXXXXXXXNIEVSFSPVSPDQLD 177
            Q+  P    L+          ++ PE KR +++T            E S  PV+PD   
Sbjct: 225 RQVSSPDPSDLRRSSRRSSLQFLE-PE-KRSSKATKYVKKG------ERSKLPVTPDV-- 274

Query: 178 TXXXXXXXXXXXXMMTRAMASKNAKSEQKGNRKRVYYKKVVYDGGEFEVGDDVYVKRRED 237
           +            ++TRA  S+NA   +K   KRVYYKKVVYDGGEF VGDDVYVKRRE+
Sbjct: 275 SEARKRKSPDEGNVVTRARVSRNAGLMRK---KRVYYKKVVYDGGEFAVGDDVYVKRREN 331

Query: 238 ASSDDEDPEVEECRVCFKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFCEARK 297
           ASSDDE+                 L+CDDCLGGFHLKCLKP LKEVPEGDWIC FCEARK
Sbjct: 332 ASSDDEE-----------------LQCDDCLGGFHLKCLKPRLKEVPEGDWICQFCEARK 374

Query: 298 LGKEVELPKSPEGKKRSRTLREKLLSSDLWAVRIESLWKEVDGSYWFKGRWYII 351
           LGKEV LPK P+GKKR RT REKLLSSDLW   IE++WKEVDG+YWF+GRWYII
Sbjct: 375 LGKEVVLPKPPKGKKRKRTAREKLLSSDLWTAHIENIWKEVDGTYWFRGRWYII 428


>GSVIVT01025457001 assembled CDS
          Length = 604

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 57/68 (83%)

Query: 273 LKCLKPPLKEVPEGDWICGFCEARKLGKEVELPKSPEGKKRSRTLREKLLSSDLWAVRIE 332
             CLKPPLKEVPEGDWIC FCEARKLGKEV LP  P+GKK+ RT REKLLSSDLWA  IE
Sbjct: 10  FACLKPPLKEVPEGDWICQFCEARKLGKEVVLPNPPKGKKQKRTAREKLLSSDLWAAHIE 69

Query: 333 SLWKEVDG 340
           ++WKEVD 
Sbjct: 70  NIWKEVDA 77


>GSVIVT01012117001 assembled CDS
          Length = 1638

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 11/77 (14%)

Query: 226 VGDDVYVKRR--EDASSD-------DEDPEVEECRVCFKAGKAVMLECDDCLGGFHLKCL 276
            G+    KRR   +ASSD         D    EC +C   G   +L CD C   +HL+CL
Sbjct: 45  TGNTSSAKRRLKGEASSDRSALKKKGNDGYYFECVICDLGGN--LLCCDSCPRTYHLQCL 102

Query: 277 KPPLKEVPEGDWICGFC 293
            PPLK +P G W C  C
Sbjct: 103 NPPLKRIPNGKWQCPKC 119


>GSVIVT01031411001 assembled CDS
          Length = 1382

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 238 ASSDDEDPEVEECRVCFKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFCEARK 297
           A +DD+D   +ECR+C   G   +L CD C   +H +C+      +P+G W C  C   K
Sbjct: 187 AETDDQDVNGDECRLCGMDG--TLLCCDGCPSVYHSRCIGVSKMFIPDGPWFCPECTIDK 244

Query: 298 LGKEVELPKSPEGKK 312
           +G  + +  S  G +
Sbjct: 245 IGPTITVGTSLRGAE 259


>GSVIVT01025216001 assembled CDS
          Length = 1452

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 17/82 (20%)

Query: 250 CRVCFKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFCEARK--LG-------- 299
           C VC   GK +  +   C   +HL CL PPL E+P G W C  C  +K  LG        
Sbjct: 447 CVVCKLGGKLLCCDGKGCKRSYHLACLDPPLGEIPPGIWHCMLCVKKKTELGVHAVSEGV 506

Query: 300 ------KEVELPKSPEGKKRSR 315
                 +EVELP S EG ++ +
Sbjct: 507 ESIWDTREVELP-SAEGVQKQK 527