Jatropha Genome Database

JcCA0028741.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028741.30 + phase: 0 
         (357 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025834001 assembled CDS                                       399   e-111
GSVIVT01009124001 assembled CDS                                       231   4e-61
GSVIVT01015432001 assembled CDS                                       164   8e-41
GSVIVT01003616001 assembled CDS                                       145   2e-35
GSVIVT01003617001 assembled CDS                                        57   1e-08

>GSVIVT01025834001 assembled CDS
          Length = 261

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/250 (74%), Positives = 215/250 (86%), Gaps = 3/250 (1%)

Query: 1   MKILCLHGFRTSGSFLQKQISKWDPSILAHFDLDFPNGIFPAGGKSDIDGIFPPPYFEWF 60
           MKILCLHGFRTSGSFL KQISKWDPSI A F ++FP+G+FPAGGKSDI+GIFPPPYFEWF
Sbjct: 1   MKILCLHGFRTSGSFLHKQISKWDPSIFAQFQMEFPDGMFPAGGKSDIEGIFPPPYFEWF 60

Query: 61  QYNQDFTEYTNLDKCISYLCEYITTKGPFDGLLGFSQGATLSALLLGYQLQGKVLKEHPP 120
           Q+N++FTEYTNL++CI+YLCEYITTKGPFDGLLGFSQGATLSALLLGYQ QGKVLKEHPP
Sbjct: 61  QFNKEFTEYTNLEECIAYLCEYITTKGPFDGLLGFSQGATLSALLLGYQAQGKVLKEHPP 120

Query: 121 MKLFISISGTKFRDPSICDIAYKDIMKIKSVHFIGAKDWLRLPSEELATAFDSPLIIRHP 180
           MKLF+SISG+KFRDPSICD+AYKD +K++SVHFIGAKDWLRLPSE+LATAFD+PLIIRHP
Sbjct: 121 MKLFVSISGSKFRDPSICDVAYKDPIKVRSVHFIGAKDWLRLPSEDLATAFDNPLIIRHP 180

Query: 181 QGHTVPRLDEAAIEQLRGWVAEIL--QCHNKDLI-EKLKNGEEAKMDAKKVQEKADENEK 237
           QGHTVPRLDEAA EQLR W  EIL  Q +N  +    L+NGE    + K   E+A + + 
Sbjct: 181 QGHTVPRLDEAATEQLRSWTTEILLHQSNNASVNKHNLENGEVKAEEHKGKVEEACKTQT 240

Query: 238 LKNGEEAKMD 247
            +   E KM+
Sbjct: 241 PEGVIEKKME 250


>GSVIVT01009124001 assembled CDS
          Length = 226

 Score =  231 bits (589), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 141/202 (69%)

Query: 2   KILCLHGFRTSGSFLQKQISKWDPSILAHFDLDFPNGIFPAGGKSDIDGIFPPPYFEWFQ 61
           + LCLHGFRTS   LQKQ+ KW  S+L   DL F +  FP+ GKSD++GIF PPY+EWFQ
Sbjct: 13  RFLCLHGFRTSADILQKQVGKWPESVLGQVDLVFADAPFPSNGKSDVEGIFDPPYYEWFQ 72

Query: 62  YNQDFTEYTNLDKCISYLCEYITTKGPFDGLLGFSQGATLSALLLGYQLQGKVLKEHPPM 121
           +N++FTEYTN D+C++Y+ +Y+   GPFDGLLGFSQGA LSA L G Q +G  L + P +
Sbjct: 73  FNKEFTEYTNFDECLAYIEDYMIKHGPFDGLLGFSQGAILSAALPGLQAKGLALTKVPKI 132

Query: 122 KLFISISGTKFRDPSICDIAYKDIMKIKSVHFIGAKDWLRLPSEELATAFDSPLIIRHPQ 181
              I I G K + PS+ + AY   ++ +S+HF+G  D+LR    EL  +F  PL+I HP+
Sbjct: 133 NFLIIIGGAKLKSPSLAEKAYSSTIQCQSIHFLGETDFLRQYGIELLESFVDPLVIHHPK 192

Query: 182 GHTVPRLDEAAIEQLRGWVAEI 203
           GHTVPRLDE +++ + G++  I
Sbjct: 193 GHTVPRLDEKSLQIMLGFLERI 214


>GSVIVT01015432001 assembled CDS
          Length = 172

 Score =  164 bits (414), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 100/123 (81%), Gaps = 9/123 (7%)

Query: 120 PMKLFISISGTKFRDPSICDIAYKDIMKIKSVHFIGAKDWLRLPSEELATAFDSPLIIRH 179
           PMKLFISISG+KFRDPSICD+AYKD +K++SVHFIGAKDWLRLPSE+LATAFD+PLIIRH
Sbjct: 19  PMKLFISISGSKFRDPSICDVAYKDPIKVRSVHFIGAKDWLRLPSEDLATAFDNPLIIRH 78

Query: 180 PQGHTVPRLDEAAIEQLRGWVAEIL--QCHNKDL-IEKLKNGE----EAKMDAKKVQEKA 232
           PQGHT+PRLDEAA EQLR    EIL  Q +N  +    L+NGE    EA+M+  +V  KA
Sbjct: 79  PQGHTIPRLDEAATEQLRSCSTEILLHQSNNPSVNKHNLENGEVKADEAQMENGEV--KA 136

Query: 233 DEN 235
           +E+
Sbjct: 137 EEH 139


>GSVIVT01003616001 assembled CDS
          Length = 151

 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 83/114 (72%)

Query: 2   KILCLHGFRTSGSFLQKQISKWDPSILAHFDLDFPNGIFPAGGKSDIDGIFPPPYFEWFQ 61
           +ILCLHGFRT    L+K + KW  ++L + DL F +  FPA GKSD++G+F PPY+EWFQ
Sbjct: 10  RILCLHGFRTRAEILKKLVGKWPETVLGNLDLVFLDAPFPAQGKSDVEGLFDPPYYEWFQ 69

Query: 62  YNQDFTEYTNLDKCISYLCEYITTKGPFDGLLGFSQGATLSALLLGYQLQGKVL 115
            NQDFTEY N ++C++Y+ +Y+   GPF GLLGFSQGA L+A L G Q QG  L
Sbjct: 70  SNQDFTEYINFEECLAYIEDYMLKHGPFHGLLGFSQGAILAAALPGMQAQGVAL 123


>GSVIVT01003617001 assembled CDS
          Length = 82

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 38/63 (60%)

Query: 141 AYKDIMKIKSVHFIGAKDWLRLPSEELATAFDSPLIIRHPQGHTVPRLDEAAIEQLRGWV 200
           A+   +   S+HFIG  D L+     L  +F  P++I HPQGHTVPRLDE A E +  ++
Sbjct: 12  AFSPPIPCPSLHFIGETDVLKQEGTALLESFVDPVVIHHPQGHTVPRLDEKAQETVLQFI 71

Query: 201 AEI 203
            +I
Sbjct: 72  RKI 74