Jatropha Genome Database

JcCA0028741.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028741.20 - phase: 0 /TE/pseudo/partial
         (638 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008224001 assembled CDS                                        74   1e-13
GSVIVT01014094001 assembled CDS                                        67   4e-11
GSVIVT01015587001 assembled CDS                                        56   4e-08

>GSVIVT01008224001 assembled CDS
          Length = 680

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 26/206 (12%)

Query: 7   CNYCGKSYKFKQAGGYGSFXKHLETKHPTKIGVDRSQQQISGNASN-LSLFKYSEKIQKE 65
           C +CG+SY    A   G+  +HL  +HP   G D+S   ++ +A   +++ K   K Q +
Sbjct: 74  CKFCGQSYSI--ATATGNLGRHLSNRHP---GYDKSGDAVTSSAPQPITIVK---KPQTQ 125

Query: 66  ELAKMISMEHLSF--------------SFGEKVGFNNYCQKALNPSAKRVPRNTIKRTII 111
             +  +  +HL++              +  EK   N++  K LNPS +  P    K    
Sbjct: 126 VKSPQVDFDHLNWLLIKWLILASLPPSTLEEKWLANSF--KFLNPSIQLWPGEKYKAVFR 183

Query: 112 SLYNKGKKELELLFSQLKIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRV 171
            ++   ++++     Q+  +VSI  D W+ + Q+  YM +TCHWID++W  QK ++    
Sbjct: 184 EVFRSMREDVRASLEQVSSKVSITVDFWTSYEQIF-YMSVTCHWIDENWCFQKVLLDICH 242

Query: 172 FDDKYTANNIYRVIVSILDEYRLTKK 197
                 +N IY  ++ +L  Y +  K
Sbjct: 243 IPYPCGSNEIYHSLIKVLKMYNIESK 268


>GSVIVT01014094001 assembled CDS
          Length = 677

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 6/170 (3%)

Query: 30  ETKHPTKIGVDRSQQQISGNASNLSLFKYSEKIQKEELAKMISMEHLSFSFGEKVGFNNY 89
           E   PT +  D  Q+Q      NL   ++ ++  + +LA+MI +     +    VGF  +
Sbjct: 99  ENIKPTILKFD--QEQKKDEPINLGSIRFDQERSRLDLARMIILHGYPLAMVNHVGFKVF 156

Query: 90  CQKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQLKIRVSICYDVWSDHWQMHSYM 149
             K L P  +    + I+   + +Y K K+++  + S+   R+++  D+W+   Q   Y+
Sbjct: 157 V-KDLQPLFEV--NSAIELDCMEIYGKEKQKVYEVMSRSHGRINLAVDMWTSPEQAE-YL 212

Query: 150 GITCHWIDDDWKIQKRIIGFRVFDDKYTANNIYRVIVSILDEYRLTKKNF 199
            +T H+ID+DWK+QK+I+ F   D  +T + +  VI+  L E+ +  K F
Sbjct: 213 CLTAHYIDEDWKLQKKILNFVSLDPSHTEDMLSEVIIKCLMEWEVGHKLF 262


>GSVIVT01015587001 assembled CDS
          Length = 839

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 9/171 (5%)

Query: 34  PTKIGVDRSQQQISGN---ASNLSLFKYSEKIQKEELAKMISMEHLSFSFGEKVGFNNYC 90
           P+K+G   S  +        S+L+   + +   + E+A+MI M        E  GF  + 
Sbjct: 176 PSKMGGAGSASEPPKRRYRTSSLASVPFDQDRCRHEIARMIIMHDYPLHMVEHPGFVAFV 235

Query: 91  QKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQLKIRVSICYDVWSDHWQMHSYMG 150
           Q  L P    V  NT++   ++ Y + K+ L      +  R+ +  D+W+   Q   Y+ 
Sbjct: 236 QN-LQPRFDMVSFNTVQGDCVATYLREKQSLLKFIEGIPGRICLTLDLWTSR-QSVGYVF 293

Query: 151 ITCHWIDDDWKIQKRIIG--FRVFDDKYTANNIYRVIVSILDEYRLTKKNF 199
           +T H+ID DWK+ +RI+      F D  TA      +   L ++ L  K F
Sbjct: 294 LTGHFIDMDWKLHRRILNVVMEPFTDSETA--FSHAVAVCLSDWSLENKLF 342