Jatropha Genome Database

JcCA0028741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028741.10 - phase: 0 
         (193 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016288001 assembled CDS                                       311   8e-86
GSVIVT01025176001 assembled CDS                                       272   6e-74

>GSVIVT01016288001 assembled CDS
          Length = 436

 Score =  311 bits (798), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 148/181 (81%), Positives = 162/181 (89%)

Query: 1   MIAAVDAIRVKGDSIGGVVTCIVRNAPCGLGSPVFDKLEAEFAKALLSLPASKGFEVGSG 60
           MIAA+DA+RV+GDS+GGVVTCIVRN P GLGSPVFDKLEAE AKA LSLPA+KGFE GSG
Sbjct: 244 MIAAIDAVRVRGDSVGGVVTCIVRNIPRGLGSPVFDKLEAELAKAALSLPATKGFEFGSG 303

Query: 61  FAGTFLTGSEHNDEFYLDEHGKIRTRRNRSGGIQEGISNGEIIKMRVAFKPTATISKKQN 120
           FAGTF+TGSEHNDEF+ D HG+IRTR NRSGGIQ GISNGEII +R+ FKPT+TI KKQ+
Sbjct: 304 FAGTFMTGSEHNDEFFTDAHGRIRTRTNRSGGIQGGISNGEIINIRIGFKPTSTIGKKQH 363

Query: 121 TVTRDRMEIELIACGRHDPCVVPRAVPMVEAMVALVLVDQLMAHHAQCGLFPINPMLQEP 180
           TVTRD+ E ELIA GRHDPCVVPRAVPMVEA VALVLVDQLMA +AQC LFPINP LQEP
Sbjct: 364 TVTRDKQETELIARGRHDPCVVPRAVPMVEAAVALVLVDQLMAQYAQCELFPINPALQEP 423

Query: 181 L 181
           L
Sbjct: 424 L 424


>GSVIVT01025176001 assembled CDS
          Length = 444

 Score =  272 bits (696), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 126/185 (68%), Positives = 154/185 (83%)

Query: 1   MIAAVDAIRVKGDSIGGVVTCIVRNAPCGLGSPVFDKLEAEFAKALLSLPASKGFEVGSG 60
           MIAA+DA+  +GDS+GGVV+CI RN P GLGSPVF+KLEA+ A+A +SLPAS GFE GSG
Sbjct: 239 MIAAIDAVMARGDSVGGVVSCIARNVPRGLGSPVFNKLEAQLARAAMSLPASIGFEFGSG 298

Query: 61  FAGTFLTGSEHNDEFYLDEHGKIRTRRNRSGGIQEGISNGEIIKMRVAFKPTATISKKQN 120
           FAGT ++GSEHNDEFY+D+ G+IRTR N SGGIQ GISNGE++ MR+AFKPT TI  KQ+
Sbjct: 299 FAGTLMSGSEHNDEFYIDKRGRIRTRTNHSGGIQGGISNGEVLNMRIAFKPTPTIEMKQH 358

Query: 121 TVTRDRMEIELIACGRHDPCVVPRAVPMVEAMVALVLVDQLMAHHAQCGLFPINPMLQEP 180
           TVTRD+ E E+++  R DPCV PRAVP+VE+M+ALVLVDQ+MA +AQC LFPIN  LQEP
Sbjct: 359 TVTRDKHETEILSHIRRDPCVAPRAVPVVESMIALVLVDQIMAQYAQCELFPINTALQEP 418

Query: 181 LNEAS 185
           +   S
Sbjct: 419 MGSLS 423