Jatropha Genome Database

JcCA0028701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028701.10 - phase: 0 
         (578 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028103001 assembled CDS                                       779   0.0  
GSVIVT01005044001 assembled CDS                                        85   1e-16
GSVIVT01031545001 assembled CDS                                        78   1e-14

>GSVIVT01028103001 assembled CDS
          Length = 558

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/579 (68%), Positives = 430/579 (74%), Gaps = 22/579 (3%)

Query: 1   MATSPCLSGSEKKHWWLSNRKIVDKYIKDARNLIATQEQSDIVSALNLLDAALAVSPRFE 60
           MATSP ++G EKKHWWL N+KIVDKY+KDAR LIATQEQS+I +ALNLLDAAL +SPRFE
Sbjct: 1   MATSPSVAGGEKKHWWLRNKKIVDKYVKDARCLIATQEQSEIATALNLLDAALGLSPRFE 60

Query: 61  VALELKARSLLYLRRFKDVADMLQDYIPSLKIXXXXXXXXXXXXXXXXXXXXXXXXXKLL 120
           VALELKARSLLYLRRFKDVADMLQDYIPSLK+                          L 
Sbjct: 61  VALELKARSLLYLRRFKDVADMLQDYIPSLKMVSDDSSSDNSSQQLSRERVKL-----LS 115

Query: 121 XXXXXXXXXXXXXXXFKCFSVSDLKKKVMAGLCKNCEKEGQWRYLVLGQACCHLGLMEDA 180
                          FKCFSVSDLKKKVMAGLCKNCEKEGQWRYLVLGQACCHLGLMEDA
Sbjct: 116 SSNNSSSDSPIRDPSFKCFSVSDLKKKVMAGLCKNCEKEGQWRYLVLGQACCHLGLMEDA 175

Query: 181 MALLQTGKRLSTAAFRREXXXXXXXXXXXXNFPISGDISTSSAPPTPPRNLSDTESISQL 240
           M LLQTGKRL+ AA RRE            NFPI+ DI+T++AP TPPR  ++ ESI+QL
Sbjct: 176 MVLLQTGKRLAMAALRRESICWSDDSFSLSNFPITNDITTNNAPATPPR--TEFESITQL 233

Query: 241 LSHIKXXXXXXXXXXXXXXXXXYSEAIRHFTKIVEGRRGAPQGFLAECYMHRAFAYKSSG 300
           LSHIK                 YSEAIRHF+KI++GRRGAPQGFL+EC+MHRA AY+S+G
Sbjct: 234 LSHIKLLLRRKTAALAALDAGLYSEAIRHFSKILDGRRGAPQGFLSECFMHRATAYRSAG 293

Query: 301 RIAEAIADCNKNLALDPTCIQALETRASLLETIRCLPDCLHDLEHLKLLYNSILRDRKLP 360
           RIAE+IADCN+ LALDPTCIQAL TRASLLE+IRCLPDCLHDLEHLKLLYNSILRDRKLP
Sbjct: 294 RIAESIADCNRTLALDPTCIQALSTRASLLESIRCLPDCLHDLEHLKLLYNSILRDRKLP 353

Query: 361 GPAWKRHNVRYREIPGKLCALTTKIQELKLRVASGETGNVDYYALIGLRRGCSRSELERA 420
           GPAWKRHNV+YREIPGKLCAL+TKIQELK RV SGETGNVDYYALIGLRRGCSRSELERA
Sbjct: 354 GPAWKRHNVQYREIPGKLCALSTKIQELKQRVVSGETGNVDYYALIGLRRGCSRSELERA 413

Query: 421 HLLLCLRHKPDKAINFVERCEFADDRDLDSVKDRAKMSALLLYRLLQKGYTSVMATIMXX 480
           HLLLCLRHKPDKA NFVERCEF+DDRDLDSVKDRAKMSALLLYRLLQKGY+SVMATIM  
Sbjct: 414 HLLLCLRHKPDKATNFVERCEFSDDRDLDSVKDRAKMSALLLYRLLQKGYSSVMATIMDE 473

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNTKPE-SNQSTMEKSGPNRISSTEIAVTSSGT 539
                                         + E  NQ+T              A     T
Sbjct: 474 EAAEKQRKKAAAALQATAIQAQQTQEQPKKESELENQAT--------------AAPQQQT 519

Query: 540 TNSSVFQGVFCRDLAAVGNLLSQVGFNRPIPVKYEALSC 578
           + +SVFQGVFCRDLA VGNLLSQ GFNR IPVKYEALSC
Sbjct: 520 STASVFQGVFCRDLAVVGNLLSQAGFNRQIPVKYEALSC 558


>GSVIVT01005044001 assembled CDS
          Length = 1564

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 28/219 (12%)

Query: 263  YSEAIRHFTKI----VEGRRGAPQGFLAECYMHRAFAYKSSGRIAEAIADCNKNLALDPT 318
            Y+EA+ H+T      VE R      F A C  +RA A+++ G+IA+AIADC+  +ALD +
Sbjct: 1298 YTEAVEHYTSALSINVESRP-----FAAICLCNRAAAHQALGQIADAIADCSLAIALDGS 1352

Query: 319  CIQALETRASLLETIRCLPDCLHDLEHLKLLYNSILRDRKLPGPAWKRHN-VRYREIPGK 377
              +A+  RA+L E IR       DL+ L            +P    + H  ++    PG+
Sbjct: 1353 YSKAVSRRATLHERIRDYRQAARDLQRL------------IPVLEKQSHEKIKLSGTPGR 1400

Query: 378  LCALTTKIQELKLRVASGETGN-----VDYYALIGLRRGCSRSELERAHLLLCLRHKPDK 432
                  +I++   R++S E        +D Y ++G++   + +++++A+    LRH PDK
Sbjct: 1401 SSGNAKEIKQAHRRLSSMEEKAKNGIPLDLYLILGIKPSETAADIKKAYRKAALRHHPDK 1460

Query: 433  AINFVERCEFADDRDL-DSVKDRAKMSALLLYRLLQKGY 470
            A  F+ R E  DD  L   + +     A  L++++ + Y
Sbjct: 1461 AGQFLARSEGGDDGQLWKEIAEEVHKDADRLFKMIGEAY 1499


>GSVIVT01031545001 assembled CDS
          Length = 1018

 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 135/314 (42%), Gaps = 54/314 (17%)

Query: 162 WRYLVLGQACCHLGLMEDAMALLQTGKRLSTAAFRREXXXXXXXXXXXXNFPISGDISTS 221
           WR  ++ ++  +LG +EDA+ LL+  K                          +G+ +  
Sbjct: 679 WRVRLIFKSYFYLGRLEDALTLLEKQKEFG-----------------------NGNKTLE 715

Query: 222 SAPPTPPRNLSDTESISQLLSHIKXXXXXXXXXXXXXXXXXYSEAIRHFTKIVEGRRGAP 281
           S+ P          ++ +LL H                   ++EA+ H+T  +       
Sbjct: 716 SSIPLAA-------TVRELLRH-------KNAGNEAFQSGRHAEAVEHYTAALSCNI-VS 760

Query: 282 QGFLAECYMHRAFAYKSSGRIAEAIADCNKNLALDPTCIQALETRASLLETIRCLPDCLH 341
           + F A C+ +R+ A+K+ G+I++AIADC+  +ALD   ++A+  RA+L E IR       
Sbjct: 761 RPFTAICFCNRSAAHKALGQISDAIADCSLAIALDGNYLKAISRRATLFEMIRDYGQATS 820

Query: 342 DLEHLKLLYNSILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKLRVASGETGN-- 399
           DL+ L  L +  L ++      + R             +    +++ +LR++  E  +  
Sbjct: 821 DLQRLVSLLSKQLEEKVNQPGGYDRS-----------TSFGNDLRQAQLRLSLMEEEDRK 869

Query: 400 ---VDYYALIGLRRGCSRSELERAHLLLCLRHKPDKAINFVERCEFADDRDLDSVKDRAK 456
              +D Y ++G+    S S++++A+    LRH PDK    + + E  D      + +   
Sbjct: 870 DIPLDMYLILGVEPSASASDIKKAYRKAALRHHPDKTGQSLAKSENGDGGFWKEIAEEVH 929

Query: 457 MSALLLYRLLQKGY 470
             A  L++++ + Y
Sbjct: 930 RDADKLFKMIGEAY 943