Jatropha Genome Database

JcCA0028681.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028681.20 + phase: 0 /TE/partial
         (1035 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004252001 assembled CDS                                       115   1e-25
GSVIVT01037358001 assembled CDS                                        82   1e-15
GSVIVT01001301001 assembled CDS                                        73   9e-13
GSVIVT01003599001 assembled CDS                                        71   3e-12
GSVIVT01004123001 assembled CDS                                        70   6e-12
GSVIVT01037622001 assembled CDS                                        67   6e-11
GSVIVT01004860001 assembled CDS                                        61   3e-09
GSVIVT01032339001 assembled CDS                                        60   6e-09

>GSVIVT01004252001 assembled CDS
          Length = 533

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 175/393 (44%), Gaps = 36/393 (9%)

Query: 505 MSRELMTNISTILNVAGSIGGGNYLGLPSLIGKSKKQVFGFLQDRLEKRIGNWSNRFLSR 564
           ++ EL   + T+ +V        YLGLP         ++  ++ R+ KR+  W  ++LS+
Sbjct: 17  LAVELGCKVGTLPSV--------YLGLPLGAKHKAMAMWDGVEARMRKRLALWKRQYLSK 68

Query: 565 AGKEVLIKSIAQAIPTYCMSVFKIPLSICVTMQKRMNKFWWGKKEGG--RRGIHWLAWER 622
            G+  LIKS   ++P Y +S F++P  +   ++K    F WG   GG   R IH + WE 
Sbjct: 69  GGRITLIKSTLASLPIYQLSFFRMPKLVVKRLEKLQRDFLWG---GGSMERKIHLINWEV 125

Query: 623 MCCSKREGGRGFRDLHCFNMAMLAKQGWRLMMEPDTLFSKLFKAKYFHNRDFLDAPLSRR 682
           +C  K  GG G R +   N A+L K  WR   E +  + K+   KY     F       R
Sbjct: 126 VCTQKESGGLGIRKIDLLNKALLGKWIWRFAFEENFFWRKVVGVKY-GQLGFGWRTKEAR 184

Query: 683 PTY---VWRSIHAAMGVLKQGVRWRVGNGETIGVLSHPWM---PLDHSFWVEDSRDFVDP 736
            T+   VWR I          + ++VG G  +   +  W     L  +F  +     V  
Sbjct: 185 GTFGVGVWRDILKDSSWCWDNIEFKVGKGTKVSFWTDHWCGNEVLSQAF-PQLFALAVQR 243

Query: 737 TMKVRELFVE--GEGRWDVGKVMTLFSMREFRAI-----LGIPISINASRDQIMWHWDKK 789
              V E++    G+G W++ ++   F+  E  A+     L   + I+   D ++W  + +
Sbjct: 244 NASVNEMWDSSLGQGGWNI-RLSRNFNDWELDALGELLHLLRDLRISLEEDAVIWKEEGR 302

Query: 790 GIYSVRSGYYVARRLLRGRVHEVDGGWWGKMWCLDASPKDKDFMWRALRNVLPTKERLRR 849
           G + +R  Y    +LL G    V       +W      K   F W A    + T ++L+R
Sbjct: 303 GRFRIRDAY----KLLSG--SNVITFPKKSIWVDKVPTKVAFFAWEASWEKVLTLDKLQR 356

Query: 850 RGVEVDIGCPWCG-EEEDINHAIVLCSKAKGVW 881
           RG ++   C  CG EEE++NH ++ C+  + +W
Sbjct: 357 RGWQLPNRCFLCGCEEENVNHILLHCTVVRALW 389


>GSVIVT01037358001 assembled CDS
          Length = 2456

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 557  WSNRFLSRAGKEVLIKSIAQAIPTYCMSVFKIPLSICVTMQKRMNKFWWGKKEGGRRGIH 616
            W   +LS  G+  LI+S    +P Y +S+FKIP S+   +++    F W   E G+R  H
Sbjct: 858  WQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPTSVVAKIERLQRDFLWSGIEEGKRN-H 916

Query: 617  WLAWERMCCSKREGGRGFRDLHCFNMAMLAKQGWRLMMEPDTLFSKLFKAKYFHNRDFLD 676
             ++W+ +C  K +GG GF  +   N+A+L K  WR + E   L+ ++  + Y  + +  D
Sbjct: 917  LVSWDVVCNPKAKGGLGFGKISLRNLALLGKWLWRYLREGSALWHQVILSIYGSHSNGWD 976

Query: 677  APLSRRPTY--VWRSIHAAMGVLKQGVRWRVGNGETI 711
            A    R ++   W++I           R+ VGNGE I
Sbjct: 977  ANTLVRWSHRCPWKAIAQVFQEFSMFTRFVVGNGERI 1013


>GSVIVT01001301001 assembled CDS
          Length = 325

 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 5/129 (3%)

Query: 542 VFGFLQDRLEKRIGNWSNRFLSRAGKEVLIKSIAQAIPTYCMSVFKIPLSICVTMQKRMN 601
           V+  +++R+ K+   W ++++S+ G+  LI S   ++P Y MS+  +P  + + +++   
Sbjct: 160 VWDGVEERMRKKSARWKSQYISKGGRITLIWSTLASMPIYFMSMLSMPRKVRLRLERIQR 219

Query: 602 KFWWGKKEGG--RRGIHWLAWERMCCSKREGGRGFRDLHCFNMAMLAKQGWRLMMEPDTL 659
            F WG   GG   R +H + W+ +C  K  GG G + L   N  +L K  WR  +E +  
Sbjct: 220 DFLWG---GGALERKLHLVRWDLVCLEKCNGGLGVKSLSILNKTLLCKWSWRFAIEREAF 276

Query: 660 FSKLFKAKY 668
           ++++ + KY
Sbjct: 277 WNQVIRGKY 285


>GSVIVT01003599001 assembled CDS
          Length = 801

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 44/67 (65%)

Query: 477 VNDILKKYERALGQAINLNKSGIFFSPNMSRELMTNISTILNVAGSIGGGNYLGLPSLIG 536
           ++ I  KYE   GQAIN  KSGIFFS N+S      IS IL V+  +  G YLGLPSLIG
Sbjct: 1   MHTIFAKYESNSGQAINFQKSGIFFSRNVSSLDRDFISNILGVSTPLNTGRYLGLPSLIG 60

Query: 537 KSKKQVF 543
           KSK+ VF
Sbjct: 61  KSKRAVF 67


>GSVIVT01004123001 assembled CDS
          Length = 386

 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 118/291 (40%), Gaps = 36/291 (12%)

Query: 567 KEVLIKSIAQAIPTYCMSVFKIPLSICVTMQKRMNKFWWGKKEGG--RRGIHWLAWERMC 624
           +  LI+S    +P Y MS+  +P  +   ++K    F WG   GG   R  H + WE +C
Sbjct: 74  RTTLIRSTLSNLPIYLMSLLCLPSVVRRRLEKIQRDFLWG---GGNLERKPHLVRWEVVC 130

Query: 625 CSKREGGRGFRDLHCFNMAMLAKQGWRLMMEPDTLFSKLFKAKYFHNRDFLDAPLSRRP- 683
            SK++GG G ++L   N A+LAK  WR   E + L++++ + KY   R    +   R   
Sbjct: 131 LSKKKGGLGVKNLSILNKALLAKWNWRFANEREALWNQVIRGKYGEERGGWSSREVREAH 190

Query: 684 -TYVWRSIHAAMGVLKQGVRWRVGNGETIGVLSHPWM---PLDHSF------WVEDSRDF 733
              +W+ I     ++   + + VGNG  +      W    PL  SF       V+     
Sbjct: 191 GLGLWKGIRMNWELVSNRLVFIVGNGRRVRFWRDKWCGDSPLCLSFPSLFALTVDKEESV 250

Query: 734 VDPTMKVRE--------LFVEGEGRWDVGKVMTLFSMREFRAILGIPISINASRDQIMWH 785
            D    + E         F+     W+V +  + F  R  R+ +     I    D++ W 
Sbjct: 251 ADVWDSLAEGGWGGWNPCFLRAFNDWEVEEASS-FMERLHRSRV-----IEDVEDRVSWT 304

Query: 786 WDKKGIYSVRSGYYVARRLLRGRVHEVDGGWWGKMWCLDASPKDKDFMWRA 836
             K G +SV+S Y         R           +W ++  PK   F W A
Sbjct: 305 ETKSGKFSVKSLYLAIEVGGSARFPS------SLIWNVNVQPKISFFAWEA 349


>GSVIVT01037622001 assembled CDS
          Length = 571

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 342 RKNQRGACALKIDISKAYDRVNWEFLRGMMLRMGFCEKWVQWMMLCVTDVKYSVLLNGKE 401
           ++N+ G    K+D  KAYD +NW FL  +M +MGF EKW  W+  C++   YS+L+N   
Sbjct: 3   KRNESGVLC-KMDKEKAYDHINWNFLLLVMQKMGFGEKWAGWISWCISTATYSILINDSS 61

Query: 402 VGPIRPGRGLRQG 414
           +G      GLR+G
Sbjct: 62  MGFFHSTNGLRKG 74


>GSVIVT01004860001 assembled CDS
          Length = 1243

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 5/134 (3%)

Query: 588 IPLSICVTMQKRMNKFWWGKKEGGRRGIHWLAWERMCCSKREGGRGFRDLHCFNMAMLAK 647
           +P S+   ++K    F W    GG++  H + WE +C  K +GG G R L C N A+L K
Sbjct: 1   MPKSVARRLEKLQRDFLWEGANGGKKA-HLVKWEVVCADKEKGGLGLRKLACLNKALLGK 59

Query: 648 QGWRLMMEPDTLFSKLFKAKYFHNRDFLDAPLSRRPTY---VWRSIHAAMGVLKQGVRWR 704
             WR     + ++ K+ +AKY    DF          +   VW+ I        + + ++
Sbjct: 60  WIWRFARAKEDIWKKVLEAKY-GQEDFGWRTRKANGVFGVGVWKEILKEFAWCWENMVFK 118

Query: 705 VGNGETIGVLSHPW 718
           VG G  I     PW
Sbjct: 119 VGKGNKIRFWIDPW 132


>GSVIVT01032339001 assembled CDS
          Length = 235

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 1/112 (0%)

Query: 557 WSNRFLSRAGKEVLIKSIAQAIPTYCMSVFKIPLSICVTMQKRMNKFWWGKKEGGRRGIH 616
           W  +++S+ G+   IKS+  ++P Y +S+F++   + + ++K    F WG    G +   
Sbjct: 2   WRRQYISKGGRLTPIKSMLSSLPIYFISLFQMSRRVRLRLEKIYRNFLWGGGMLGNKP-Q 60

Query: 617 WLAWERMCCSKREGGRGFRDLHCFNMAMLAKQGWRLMMEPDTLFSKLFKAKY 668
            + W+ +C  KR+GG   R L+  NMA++ K  W    E D  + K+F  K+
Sbjct: 61  LVKWDIVCLDKRKGGLRVRCLNSLNMALICKWIWCFYKEMDAFWRKVFCGKF 112