Jatropha Genome Database

JcCA0028681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028681.10 - phase: 0 /partial
         (468 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013566001 assembled CDS                                       361   e-100

>GSVIVT01013566001 assembled CDS
          Length = 974

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/233 (76%), Positives = 197/233 (84%), Gaps = 21/233 (9%)

Query: 109 LTSKEKLDIARHLSKLGVDIIEAGFPAASNDDFEAVKTIAKEVGNAVDDEGYVPVICGLS 168
           +TSKEKLDIAR L+KLGVDIIEAGFPAAS DD +AVK IAKEVGNAVD+ G+VPVICGL+
Sbjct: 1   MTSKEKLDIARQLAKLGVDIIEAGFPAASKDDLDAVKIIAKEVGNAVDENGHVPVICGLA 60

Query: 169 RCNEKDIKTAWEAVKYAKRPRIHTFIATSEIHMQYKLRKSKEEVVEIATNMVKFARSLGC 228
           RCN  DI TAWEA                     YKL+KS++EV+EIA  MVK+ARSLGC
Sbjct: 61  RCNRNDISTAWEA---------------------YKLKKSEKEVIEIAREMVKYARSLGC 99

Query: 229 DDVEFSPEDAGRSDREFLYHILGEVIKAGATTLNIPDTVGITLPSEFGQLIADIRANTPG 288
           DDVEFSPEDAGRS+REFLY ILGEVIKAGATTLNIPDTVG T+P+EFGQLIADI++NTPG
Sbjct: 100 DDVEFSPEDAGRSEREFLYKILGEVIKAGATTLNIPDTVGYTVPNEFGQLIADIKSNTPG 159

Query: 289 IENVIISTHCQNDLGLSTANTLAGTYAGARQVEVTVNGIGERAGNASLEEVVM 341
           IENVIISTHCQNDLGLSTANT+AG  AGARQVEVT+NGIGERAGNASLEEV +
Sbjct: 160 IENVIISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVCL 212



 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 112/130 (86%)

Query: 339 VVMAIKCRGEHVLGGLYTGINSKHITMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQ 398
           VVMA+KCRGE  LGGLYTGIN +HI   SKMV EY+GL VQPHKAIVGANAFAHESGIHQ
Sbjct: 680 VVMALKCRGEKALGGLYTGINIRHIVKTSKMVAEYSGLQVQPHKAIVGANAFAHESGIHQ 739

Query: 399 DGMLKHKGTYEIMSPEDIGLERANDAGIVLGKLSGRHALKDRLKELGYELSDEQLGNIFW 458
           DGMLKHK TYEI+SPEDIGL R+N++GIVLGKLSGRHALK RL ELGYE+   +L +IFW
Sbjct: 740 DGMLKHKETYEIISPEDIGLFRSNESGIVLGKLSGRHALKSRLLELGYEIEGMELDDIFW 799

Query: 459 RFKSVAENKK 468
           RFK VAE KK
Sbjct: 800 RFKEVAEKKK 809