Jatropha Genome Database

JcCA0028391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028391.10 + phase: 0 
         (77 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010274001 assembled CDS                                       112   3e-26
GSVIVT01000230001 assembled CDS                                        72   4e-14
GSVIVT01036750001 assembled CDS                                        45   1e-05

>GSVIVT01010274001 assembled CDS
          Length = 77

 Score =  112 bits (280), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 58/77 (75%)

Query: 1  MKCPMRLFSTXXXXXXXXXATETGPMVAEARTCESLSHRFKGICVRNSNCAAICQTEGFQ 60
          MK   RLFS          ATE GPMVAEARTCES SHRFKG CVR SNCAA+CQTEGF 
Sbjct: 1  MKGSQRLFSAFLLVILLFMATEMGPMVAEARTCESQSHRFKGTCVRQSNCAAVCQTEGFH 60

Query: 61 GGHCRGLRRRCFCTKHC 77
          GG+CRG RRRCFCTKHC
Sbjct: 61 GGNCRGFRRRCFCTKHC 77


>GSVIVT01000230001 assembled CDS
          Length = 75

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 20 ATETGPMVAEARTCESLSHRFKGICVRNSNCAAICQTEGFQGGHCRGLRRRCFCTKHC 77
          A++   + +EAR CES SH+F+G C+ + NCA +C+ EGF GG C+GLRRRCFCTK C
Sbjct: 18 ASQEMVVPSEARVCESQSHKFEGACMGDHNCALVCRNEGFSGGKCKGLRRRCFCTKLC 75


>GSVIVT01036750001 assembled CDS
          Length = 55

 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 29 EARTCESLSHRFKGICVRNSNCAAICQTEGF 59
          EAR CES SH F+G+CV N NCA +C+ E F
Sbjct: 7  EARLCESQSHWFRGVCVSNHNCAVVCRNEHF 37