Jatropha Genome Database
- JcCA0028191.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0028191.10 - phase: 1 /pseudo/partial
(322 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01033519001 assembled CDS 325 1e-89
GSVIVT01013452001 assembled CDS 65 6e-11
GSVIVT01017678001 assembled CDS 60 1e-09
GSVIVT01012247001 assembled CDS 60 2e-09
GSVIVT01032239001 assembled CDS 60 2e-09
GSVIVT01028208001 assembled CDS 59 3e-09
GSVIVT01020578001 assembled CDS 58 5e-09
GSVIVT01008556001 assembled CDS 58 5e-09
GSVIVT01010522001 assembled CDS 58 7e-09
GSVIVT01020050001 assembled CDS 57 8e-09
GSVIVT01014302001 assembled CDS 57 8e-09
GSVIVT01033064001 assembled CDS 56 2e-08
GSVIVT01010496001 assembled CDS 56 2e-08
GSVIVT01021087001 assembled CDS 55 3e-08
GSVIVT01020051001 assembled CDS 54 7e-08
GSVIVT01018205001 assembled CDS 54 7e-08
GSVIVT01003836001 assembled CDS 51 7e-07
GSVIVT01018204001 assembled CDS 50 1e-06
GSVIVT01017835001 assembled CDS 50 2e-06
>GSVIVT01033519001 assembled CDS
Length = 349
Score = 325 bits (834), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 170/258 (65%), Positives = 200/258 (77%), Gaps = 11/258 (4%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYDSSNR-GGGFLVD 128
RFHQL EFDQGKRSCRRRLAGHNERRRKPPPGS+LSSRY RLSS+++++S+R GGGFL+D
Sbjct: 98 RFHQLAEFDQGKRSCRRRLAGHNERRRKPPPGSLLSSRYGRLSSSIFENSSRVGGGFLMD 157
Query: 129 FSAYSRLSGRDAWPTGRSSERSPVNQTASTGRSIPHPWQNSSQNPPSNLYLQXXXXXXXX 188
F+AY R RD WPT R+S+R P NQT + GR +PHPWQ++S+NP L+LQ
Sbjct: 158 FAAYPRHPERDTWPTTRASDRVPGNQTTAMGRFLPHPWQSNSENP---LFLQGSAGGTSF 214
Query: 189 XXXXXIPSGECFTGVGIADSSCALSLLSNQPWGSRNQEPGLGVNT----QGAPMAQSTAP 244
IPSGECFTG +DSSCALSLLSNQPW SRN+ GLG N+ +GA MAQ TAP
Sbjct: 215 HGPG-IPSGECFTGA--SDSSCALSLLSNQPWSSRNRASGLGANSFMNPEGASMAQPTAP 271
Query: 245 HGAAVNQYSNPSWGFKGSEASSSSHEMCPDLGLGQISQPLNSHFSGELELSQQNRRQYME 304
H AA+N + + SW FKG+E SSSS EM PDLGLGQISQP+NS FSG EL QQ+ RQYME
Sbjct: 272 HSAAINHFPSTSWDFKGNEGSSSSQEMPPDLGLGQISQPINSQFSGGGELPQQSGRQYME 331
Query: 305 LDHSRAFDSSTHHIHWSL 322
L+HSRA+DSST +HWSL
Sbjct: 332 LEHSRAYDSSTQQMHWSL 349
>GSVIVT01013452001 assembled CDS
Length = 921
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYDSSNRGGGFLVDF 129
RFH L EFD+GKRSCRRRLAGHN RRRK P V SSR L ++ NR +
Sbjct: 168 RFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDV-SSRL-LLPGNRDNTGNRNLDIVNLL 225
Query: 130 SAYSRLSGRDAWPTGRSS---ERSPVNQTASTGRSIPHPWQNSSQNPPS 175
+A +R G + + +S +R + Q S S+P P +++ P S
Sbjct: 226 TALARTQGNNEVKSANNSSVPDRDQLIQILSKLNSLPLPADFAAKLPIS 274
>GSVIVT01017678001 assembled CDS
Length = 980
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 30/36 (83%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLS 105
RFH L EFD+GKRSCRRRLAGHN RRRK P +V++
Sbjct: 171 RFHLLQEFDEGKRSCRRRLAGHNRRRRKTHPDTVVN 206
>GSVIVT01012247001 assembled CDS
Length = 498
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 78/206 (37%), Gaps = 30/206 (14%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYDSSNRGGGFLVD- 128
RFH L EFD GKRSCR+RLAGHNERRRKP + L S Y + G L
Sbjct: 200 RFHLLAEFDDGKRSCRKRLAGHNERRRKPQLDTHSGKPQKLLQS--YPGTRILGTSLAKR 257
Query: 129 --FSAYSRLSGRDAWPTGRSS---------ERSPVNQTAST--------GRSIPHPWQNS 169
F L G P G E+ P+ + +S H +
Sbjct: 258 PPFVFQDILPGSVYCPDGYGQANPSRSIKLEKEPIYSSQLVIPISGQLPPKSFLHLYGTE 317
Query: 170 SQNPPSNLYLQXXXXXXXXXXXXXIPSGECFTGVGIADSSCALSLLSNQPWGSRNQEPGL 229
Q PP L P+ G++ S+CALSLLS Q N +
Sbjct: 318 RQCPPGFL------SSGTEDCTGFYPASTVQELPGVSKSNCALSLLSAQSQDLSNHL--M 369
Query: 230 GVNTQGAPMAQSTAPHGAAVNQYSNP 255
G+ P Q H +AV+ P
Sbjct: 370 GIPMANPPTVQGCHAHYSAVHNSDKP 395
>GSVIVT01032239001 assembled CDS
Length = 326
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYD 117
RFH+L EFD KRSCRRRL HN RRR+P P S+ S RL S+LYD
Sbjct: 98 RFHELTEFDDKKRSCRRRLNDHNARRRRPHPESIQFS-SGRLPSSLYD 144
>GSVIVT01028208001 assembled CDS
Length = 860
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 28/33 (84%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGS 102
RFH L EFD+GKRSCRRRLAGHN+RRRK P +
Sbjct: 177 RFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDA 209
>GSVIVT01020578001 assembled CDS
Length = 169
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 26/28 (92%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRK 97
RFH+L EFD+ KRSCRRRLAGHNERRRK
Sbjct: 96 RFHELSEFDEAKRSCRRRLAGHNERRRK 123
>GSVIVT01008556001 assembled CDS
Length = 377
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPP 100
RFH L EFD+GKRSCR+RL GHN RRRKP P
Sbjct: 139 RFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 169
>GSVIVT01010522001 assembled CDS
Length = 421
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPG--SVLSSRY 108
RFH L EFD+GKRSCR+RL GHN RRRKP P S+ S R+
Sbjct: 137 RFHSLGEFDEGKRSCRKRLDGHNRRRRKPQPEPLSITSGRF 177
>GSVIVT01020050001 assembled CDS
Length = 116
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 28/32 (87%)
Query: 69 IRFHQLPEFDQGKRSCRRRLAGHNERRRKPPP 100
+RFH L EFD+GKRSC+RRLAGHN+RRRK P
Sbjct: 24 LRFHVLQEFDEGKRSCQRRLAGHNKRRRKTHP 55
>GSVIVT01014302001 assembled CDS
Length = 204
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 26/28 (92%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRK 97
RFH+L EFD+ KRSCRRRLAGHNERRRK
Sbjct: 130 RFHELSEFDEAKRSCRRRLAGHNERRRK 157
>GSVIVT01033064001 assembled CDS
Length = 378
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYDSSNRGGGFLVDF 129
RFH L EFD+ KRSCR+RL GHN RRRK P S L S + S+++G GFL F
Sbjct: 136 RFHSLGEFDEVKRSCRKRLDGHNRRRRKTQPESFY------LGSGNFLSNHQGTGFL-QF 188
Query: 130 SAYSRLSGRDA----WP-TGRSSERSPVNQTASTGRSIPHPWQNSSQN 172
+ L+ A WP RS E + P P+ NS N
Sbjct: 189 GSSQMLTTSTASSPTWPRIARSEEEAMFYNHCQQLHVGPIPFPNSMYN 236
>GSVIVT01010496001 assembled CDS
Length = 418
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSS 113
RFH L EFD+ KRSCRRRL+ HN RRRKP P + S+ RLSS
Sbjct: 174 RFHSLSEFDEKKRSCRRRLSDHNARRRKPQPEGIQSNSA-RLSS 216
>GSVIVT01021087001 assembled CDS
Length = 140
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 25/28 (89%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRK 97
RFH+L EFD KRSCRRRLAGHNERRRK
Sbjct: 102 RFHELSEFDDTKRSCRRRLAGHNERRRK 129
>GSVIVT01020051001 assembled CDS
Length = 115
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 69 IRFHQLPEFDQGKRSCRRRLAGHNERRRKPP 99
+RFH L EFD+GKRSC+RRLAGHN+RR+ P
Sbjct: 24 LRFHVLQEFDEGKRSCQRRLAGHNKRRKTHP 54
>GSVIVT01018205001 assembled CDS
Length = 404
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 26/34 (76%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSV 103
RFH + EFD KRSCRRRLAGHNERRRK SV
Sbjct: 208 RFHAVSEFDDSKRSCRRRLAGHNERRRKSSHDSV 241
>GSVIVT01003836001 assembled CDS
Length = 207
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPP 100
RFH++ +FD KRSCR+RLAGHN+RRRK P
Sbjct: 131 RFHEISQFDDTKRSCRKRLAGHNQRRRKNQP 161
>GSVIVT01018204001 assembled CDS
Length = 388
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 23/28 (82%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRK 97
RFH L EFD GKRSCR+RLA HN RRRK
Sbjct: 283 RFHLLSEFDNGKRSCRKRLADHNRRRRK 310
>GSVIVT01017835001 assembled CDS
Length = 692
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGS 102
+FH L +FD+GKRSCRR+L HN RRR+ P S
Sbjct: 71 KFHILSDFDEGKRSCRRKLERHNNRRRRKPIDS 103