Jatropha Genome Database

JcCA0028161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028161.10 - phase: 0 /partial
         (527 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033523001 assembled CDS                                       706   0.0  

>GSVIVT01033523001 assembled CDS
          Length = 561

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/527 (66%), Positives = 407/527 (77%), Gaps = 9/527 (1%)

Query: 1   MQTPDDIRNLPIDITFSRLGEWLVDRKRVPADWRKRIAAVRARISKEFSSLPKDIDPYFQ 60
           MQ PDDIRNLPIDITFSRLGEWLVDRKRVPADWRKR+ ++RARIS  F+SLPK+IDPYFQ
Sbjct: 1   MQNPDDIRNLPIDITFSRLGEWLVDRKRVPADWRKRLTSIRARISTAFASLPKEIDPYFQ 60

Query: 61  TLDPEGIGYLEAKKIYDVLVKKTPESRNIFGRLSGAAGAWEAIVHSFEKDYIYLGEAAQI 120
           TLDPEGIGY+EAK+IYD+L++ TPESRNIFGRLSGAAG WEAIV +FEKD+I+LGEAAQI
Sbjct: 61  TLDPEGIGYIEAKQIYDILLRSTPESRNIFGRLSGAAGVWEAIVRAFEKDHIFLGEAAQI 120

Query: 121 IIQNVNYEIPYXXXXXXXXXXXLAELERKEADIKRSASLSAAKYIEACQELGLQGNNVRS 180
           ++QNVNYEIPY           LAELERKEADIKR+A+LSAAKY EACQELGLQGNNVR 
Sbjct: 121 MVQNVNYEIPYQKKQVQKIQQQLAELERKEADIKRNAALSAAKYAEACQELGLQGNNVRL 180

Query: 181 ELLETAKSLPGTFSRILEVINSDSLLRAIEYYSTFVKDVHTEKDKSSWTILLNLKDIREN 240
           ELLET K+LP  FS+ LEVI+SD +LRA+EYYS FV+D HTEKDK S T+L+NL D+REN
Sbjct: 181 ELLETTKTLPSIFSKFLEVISSDCVLRAMEYYSNFVRDAHTEKDKMSRTVLINLGDVREN 240

Query: 241 PPSLNVSAGPEILDAANVQLSFDESSHVRGXXXXXXXXXXXXXXXXXAQIDWDIGVVEET 300
           PP LNVSAG ++LD+ NVQ S  E++++                   +QIDWDIG VEET
Sbjct: 241 PPCLNVSAGSDVLDSMNVQPSSHETNNMTEVMDVPADYIDWDISVDSSQIDWDIGTVEET 300

Query: 301 DDGGNGLGPYEIVNASDILQSSSQNEAVESERTPLNKGEDSLHPEVSVSEISWDISVETP 360
           DD GNGLGPYEIVNAS+ILQ+ S   A         K ED L P +S S+ISWDI VE P
Sbjct: 301 DDTGNGLGPYEIVNASEILQNISPTAA---------KEEDGLVPGMSASDISWDICVENP 351

Query: 361 QVDVIDDVNLLNGSLENPTFVPDSLMHNAGVKEERSQLLETEYRNKLLDDLYEIKAFLSQ 420
           QVD ++DV   N  ++    V D+      +KE+RSQLLETEYRNK+LDDL+E+KAFL+Q
Sbjct: 352 QVDEVEDVIFPNEDMKTQASVLDTKTRTPEIKEDRSQLLETEYRNKILDDLFEMKAFLNQ 411

Query: 421 RLTELRNEETLSLQHQVQSVAPLVVQQYTPDAIETMLSDVFLVISLLTNRKTRDLIMILN 480
           RL ELRNEETLSLQHQVQ+VAP V+QQYTPDAI+ MLSDV   ISLLTNRK +DLIMILN
Sbjct: 412 RLVELRNEETLSLQHQVQAVAPFVLQQYTPDAIQAMLSDVSSAISLLTNRKMQDLIMILN 471

Query: 481 SRRFLDRLVSSXXXXXXXXXXXXXXXXDLAAKRMELHNSLSSSWPKQ 527
           S+RFLDRLVS+                DL  +RMEL NSLSSSWPKQ
Sbjct: 472 SKRFLDRLVSTLEEKKHHEAKLKEGLKDLTIRRMELQNSLSSSWPKQ 518