Jatropha Genome Database

JcCA0025111.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0025111.30 + phase: 0 
         (157 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027579001 assembled CDS                                       131   1e-31
GSVIVT01018446001 assembled CDS                                        88   2e-18
GSVIVT01019883001 assembled CDS                                        77   2e-15

>GSVIVT01027579001 assembled CDS
          Length = 218

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 90/153 (58%), Gaps = 2/153 (1%)

Query: 1   MQGTIERFRKHVKDTQVTK-KITDENMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXX 59
           MQ TIER+++H KD      K T+ NMQHLK EAA+M KKIE LE +KRK          
Sbjct: 62  MQETIERYQRHTKDVHTNNYKTTEHNMQHLKHEAANMAKKIELLEISKRKLLGEGLGSCS 121

Query: 60  XXXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGFK 119
                       RSVSSIRARKNQVFKEQIE+L+EKE+ LAAENA L EKCG+QP Q   
Sbjct: 122 IEELQQIEQQLERSVSSIRARKNQVFKEQIEQLKEKEKALAAENAMLCEKCGVQPYQAPN 181

Query: 120 QLGEQNMXXXXXXXXXXXXXXLFIGLPETRNKR 152
           Q  E  +              LFIGLPE R KR
Sbjct: 182 QENE-TLPSAERSQNSDVSTDLFIGLPEGRAKR 213


>GSVIVT01018446001 assembled CDS
          Length = 203

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 1   MQGTIERFRKHVKDTQVTKKITDENMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXXX 60
           MQ  IER+R+H K  +      ++ MQ+LK +A SM KKIE LE ++RK           
Sbjct: 55  MQSAIERYREHAKQVETNNPELEQYMQNLKQDAESMAKKIELLEVSQRKLLGQGLSSCSL 114

Query: 61  XXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEK------CGIQP 114
                      +S+ SIRARK Q+F+EQIE L+E+E+ L  ENARLS+K         QP
Sbjct: 115 DEILEIDSQLEKSLKSIRARKAQIFQEQIEELKEREKQLLEENARLSQKDTRQWQLSAQP 174

Query: 115 LQGFKQLGEQNMXXXXXXXXXXXXXXLFIGLPETR 149
            +G        +              LFIGLPE R
Sbjct: 175 SEG--------VTYSQSSPSSEVETELFIGLPEMR 201


>GSVIVT01019883001 assembled CDS
          Length = 207

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 73/150 (48%), Gaps = 6/150 (4%)

Query: 4   TIERFRKHVKDTQVTKKITDENMQH-LKTEAASMVKKIEHLETAKRKXXXXXXXXXXXXX 62
           TIER++   K   ++K+   EN QH L+ E   + KKIE LE +KR+             
Sbjct: 58  TIERYQSKAKGLGISKRGAPENEQHHLEGETVDLAKKIELLEVSKRRLLGECLDSCSIEE 117

Query: 63  XXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGFKQLG 122
                    +S+S+IR +KN + K  IERL+E+ER+L  ENA+L  KCG+QPLQ      
Sbjct: 118 LQQIENELEQSLSNIRIQKNHLCKGHIERLKEQERILGEENAKLRGKCGLQPLQ-----P 172

Query: 123 EQNMXXXXXXXXXXXXXXLFIGLPETRNKR 152
                             LFIG PE R  R
Sbjct: 173 STKHQSVPYVEISEVETELFIGPPERRTVR 202