Jatropha Genome Database

JcCA0025111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0025111.10 + phase: 1 /pseudo/partial
         (412 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027580001 assembled CDS                                       504   e-143
GSVIVT01009661001 assembled CDS                                        87   1e-17

>GSVIVT01027580001 assembled CDS
          Length = 401

 Score =  504 bits (1299), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 236/313 (75%), Positives = 276/313 (88%), Gaps = 1/313 (0%)

Query: 81  RFSQSSRKQAVNEIKRKASCDRFPRVLLFPEGTTTNGKVIISFQLGAFIPGFAIQPVIVR 140
           RFSQSSRKQAVNEIK+KASC+R+PRVLLFPEGTTTNG+VIISFQLGAFIPG+ IQPV+VR
Sbjct: 82  RFSQSSRKQAVNEIKKKASCERYPRVLLFPEGTTTNGRVIISFQLGAFIPGYPIQPVVVR 141

Query: 141 YPHVHFDQSWGHISLAKLMIRMFTQFHNFMEVEYLPIVSPLDNCKENPAHFAKRASHAIA 200
           YPH+HFDQSWGHISL +LM RMFTQFHNFMEVEYLP++SPL+N KEN  HFAKR SHAIA
Sbjct: 142 YPHIHFDQSWGHISLGRLMFRMFTQFHNFMEVEYLPVISPLENKKENAVHFAKRTSHAIA 201

Query: 201 SALNVVQTFHSYGDLMLLMKASESNKEKPSSFMVEMAKVESLFHISSLEAVDFLDKFLSM 260
           +ALNVVQT HSYGDLMLL +AS+S +EKPSS+MVEMA+VES FH+S+LEAVDFLD FLSM
Sbjct: 202 TALNVVQTSHSYGDLMLLTRASQSKQEKPSSYMVEMARVESSFHLSTLEAVDFLDTFLSM 261

Query: 261 NPNASGRVNFSDFVRVMRLRACPLSEEIFGFIDVEKSGSITFKQFLYGSVHVMKQPLFRQ 320
           NP+ SG V   DF RV+RL+ C LSE+IFGFIDV+KSG +TFKQFL+GS HVMKQPLFRQ
Sbjct: 262 NPDPSGCVKIHDFFRVLRLKPCYLSEKIFGFIDVDKSGRVTFKQFLFGSAHVMKQPLFRQ 321

Query: 321 TCELAFSKCSDRGD-RISREQLGDMVRLAIPDLDDEEVQELFKLFDTDGDGWVGKDNFIS 379
            CELAF++C   GD  IS ++LGD +R  IPDL+++E+QE+F LFDTD DG V KD+F +
Sbjct: 322 ACELAFAECDSDGDLYISEQELGDSIRPVIPDLNEDEIQEMFNLFDTDKDGRVSKDDFSN 381

Query: 380 CLRKNPLLIALFS 392
           CLR++PLLIALFS
Sbjct: 382 CLRRHPLLIALFS 394


>GSVIVT01009661001 assembled CDS
          Length = 374

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 5/133 (3%)

Query: 81  RFSQSSRKQAVNEIKRKASCD----RF-PRVLLFPEGTTTNGKVIISFQLGAFIPGFAIQ 135
           R S+SS  + V  +  +  C+    +F P ++LFPEGTTTNG  ++ F+ GAF+    + 
Sbjct: 221 RESKSSDFKGVAGVVTERVCEAHQNKFAPMMMLFPEGTTTNGGFLLPFKTGAFLAKAPVL 280

Query: 136 PVIVRYPHVHFDQSWGHISLAKLMIRMFTQFHNFMEVEYLPIVSPLDNCKENPAHFAKRA 195
           PVI+RYP+  F  +W  IS  + +I +F QF N +EV  LP+  P    K++P  +A   
Sbjct: 281 PVILRYPYQRFSPAWDSISGVRHVIFLFCQFVNHIEVTRLPVYIPSQQEKDDPKLYANNV 340

Query: 196 SHAIASALNVVQT 208
              +AS  N++ +
Sbjct: 341 RKLMASEGNLIMS 353