Jatropha Genome Database

JcCA0022221.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0022221.40 - phase: 0 /pseudo/partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025046001 assembled CDS                                        60   2e-10
GSVIVT01034137001 assembled CDS                                        60   3e-10
GSVIVT01034146001 assembled CDS                                        59   5e-10
GSVIVT01025077001 assembled CDS                                        59   7e-10
GSVIVT01016512001 assembled CDS                                        57   2e-09
GSVIVT01016490001 assembled CDS                                        57   2e-09
GSVIVT01016513001 assembled CDS                                        57   2e-09
GSVIVT01034138001 assembled CDS                                        56   5e-09
GSVIVT01034139001 assembled CDS                                        56   5e-09
GSVIVT01034140001 assembled CDS                                        55   8e-09
GSVIVT01034142001 assembled CDS                                        47   2e-06

>GSVIVT01025046001 assembled CDS
          Length = 566

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/28 (96%), Positives = 28/28 (100%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNTSVEL+MQDTSILGAESHPLHL
Sbjct: 444 VVLPFNTSVELVMQDTSILGAESHPLHL 471


>GSVIVT01034137001 assembled CDS
          Length = 586

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 28/28 (100%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLP+NTSVEL+MQDTSILGAESHPLHL
Sbjct: 464 VVLPYNTSVELVMQDTSILGAESHPLHL 491


>GSVIVT01034146001 assembled CDS
          Length = 579

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 27/28 (96%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNTSVEL+MQDTSILGAESHP HL
Sbjct: 457 VVLPFNTSVELVMQDTSILGAESHPFHL 484


>GSVIVT01025077001 assembled CDS
          Length = 585

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 28/28 (100%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNTSVEL++QDTSILGAESHPLHL
Sbjct: 463 VVLPFNTSVELVVQDTSILGAESHPLHL 490


>GSVIVT01016512001 assembled CDS
          Length = 1094

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/28 (89%), Positives = 27/28 (96%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNTSVEL++QDTSILG ESHPLHL
Sbjct: 972 VVLPFNTSVELVLQDTSILGIESHPLHL 999



 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/28 (85%), Positives = 27/28 (96%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNT+VEL++QDTSILG ESHPLHL
Sbjct: 451 VVLPFNTTVELVLQDTSILGIESHPLHL 478


>GSVIVT01016490001 assembled CDS
          Length = 1050

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/28 (89%), Positives = 27/28 (96%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNTSVEL++QDTSILG ESHPLHL
Sbjct: 928 VVLPFNTSVELVLQDTSILGIESHPLHL 955


>GSVIVT01016513001 assembled CDS
          Length = 583

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/28 (89%), Positives = 27/28 (96%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNTSVEL++QDTSILG ESHPLHL
Sbjct: 461 VVLPFNTSVELVLQDTSILGIESHPLHL 488


>GSVIVT01034138001 assembled CDS
          Length = 1829

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/28 (85%), Positives = 27/28 (96%)

Query: 1    VVLPFNTSVELIMQDTSILGAESHPLHL 28
            VVLPFNT VEL++QDTSI+GAESHPLHL
Sbjct: 1707 VVLPFNTRVELVLQDTSIIGAESHPLHL 1734


>GSVIVT01034139001 assembled CDS
          Length = 584

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/28 (85%), Positives = 27/28 (96%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNT VEL++QDTSI+GAESHPLHL
Sbjct: 462 VVLPFNTRVELVLQDTSIIGAESHPLHL 489


>GSVIVT01034140001 assembled CDS
          Length = 261

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 27/28 (96%)

Query: 1   VVLPFNTSVELIMQDTSILGAESHPLHL 28
           VVLPFNT VEL++QDTSI+GAESHPLHL
Sbjct: 139 VVLPFNTRVELVLQDTSIIGAESHPLHL 166


>GSVIVT01034142001 assembled CDS
          Length = 54

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 26/33 (78%)

Query: 92  HKLGYEDGLGCVRWKASQSKAASSTLRPSHVLK 124
           ++LG EDGLGC  WKASQSKAASST R S +L 
Sbjct: 17  YQLGPEDGLGCHGWKASQSKAASSTFRSSQMLN 49