Jatropha Genome Database

JcCA0022221.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0022221.30 + phase: 0 
         (296 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014351001 assembled CDS                                       448   e-126
GSVIVT01005203001 assembled CDS                                       429   e-121

>GSVIVT01014351001 assembled CDS
          Length = 297

 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/256 (83%), Positives = 228/256 (89%)

Query: 41  LARSRNFRSRVVGIIPARFASSRFQGKPLVQILGKPMIQRTWERAKLATTLDHIVVATDD 100
           L RS  FRSRVVGIIPARFASSRFQGKPLVQILGKPMIQRTWERAKLATTLDH+VVATDD
Sbjct: 42  LRRSGKFRSRVVGIIPARFASSRFQGKPLVQILGKPMIQRTWERAKLATTLDHVVVATDD 101

Query: 101 EKIAECCRGFGADVIMTSESCRNGTERCNEALGKLEKKYDVVVNIQGDEPLIEPEIIDGI 160
           +KIA+CCRGFGADVIMTSESCRNGTERCNEAL KLEK+YD+VVNIQGDEPLIEPEIIDG+
Sbjct: 102 DKIADCCRGFGADVIMTSESCRNGTERCNEALQKLEKQYDIVVNIQGDEPLIEPEIIDGV 161

Query: 161 VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNRGYAIYFSRGLIPYNKSGKVNQQF 220
           VKALQAAPDAVFSTAVTSLKPED FDPNRVKC+VDNRGYAIYFSRGLIP+NKSG+VNQQF
Sbjct: 162 VKALQAAPDAVFSTAVTSLKPEDGFDPNRVKCIVDNRGYAIYFSRGLIPFNKSGEVNQQF 221

Query: 221 PYLLHLGIQSYDAKFLKIYXXXXXXXXXXXXXXXXXXXXXNGYKMKVMKVDHEAHGVDTP 280
           PYLLHLGIQSYD KFL+IY                     NGYKMKV+KVDHEAHGVDTP
Sbjct: 222 PYLLHLGIQSYDTKFLRIYPDLPPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDTP 281

Query: 281 DDVEKIETLMRERNLS 296
           +DV+KIE+ MRERNLS
Sbjct: 282 EDVDKIESFMRERNLS 297


>GSVIVT01005203001 assembled CDS
          Length = 293

 Score =  429 bits (1102), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/256 (80%), Positives = 220/256 (85%)

Query: 41  LARSRNFRSRVVGIIPARFASSRFQGKPLVQILGKPMIQRTWERAKLATTLDHIVVATDD 100
           L RS   RS+VVGIIPARFASSRF+GKPLV +LGKPMIQRTWERAKLATTLD +VVATDD
Sbjct: 38  LRRSVKLRSQVVGIIPARFASSRFEGKPLVPLLGKPMIQRTWERAKLATTLDQLVVATDD 97

Query: 101 EKIAECCRGFGADVIMTSESCRNGTERCNEALGKLEKKYDVVVNIQGDEPLIEPEIIDGI 160
           EKIAECCRGFGADVIMTSESCRNGTERCNEAL KL K +D+VVNIQGDEPLIEPEIIDG+
Sbjct: 98  EKIAECCRGFGADVIMTSESCRNGTERCNEALKKLRKNFDIVVNIQGDEPLIEPEIIDGV 157

Query: 161 VKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNRGYAIYFSRGLIPYNKSGKVNQQF 220
           VKALQAAPDAVFSTAVTSLKPEDA DPNRVKC+VDNRGYAIYFSRGLIPYNKSGKVN  F
Sbjct: 158 VKALQAAPDAVFSTAVTSLKPEDASDPNRVKCIVDNRGYAIYFSRGLIPYNKSGKVNPHF 217

Query: 221 PYLLHLGIQSYDAKFLKIYXXXXXXXXXXXXXXXXXXXXXNGYKMKVMKVDHEAHGVDTP 280
           PY LHLGIQSYDA+FL+IY                     NGYKMKV+KVDH+AHGVDTP
Sbjct: 218 PYFLHLGIQSYDAQFLRIYPELSPTPLQLEEDLEQLKVLENGYKMKVIKVDHDAHGVDTP 277

Query: 281 DDVEKIETLMRERNLS 296
           +DVEKIE LMR +NLS
Sbjct: 278 EDVEKIEALMRAQNLS 293