Jatropha Genome Database

JcCA0022221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0022221.10 - phase: 0 /partial
         (201 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025215001 assembled CDS                                        55   2e-08

>GSVIVT01025215001 assembled CDS
          Length = 805

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 106 SDPLPIEIERILRDERHELRMHEDMVLHIISEREKEMREIFK----KYEVLLQDAERAVH 161
           SDPL  E+ERI ++    +++HED    + S+ EKE+ E+      KY+  LQD E    
Sbjct: 477 SDPLQNELERIRKEIDQTIKIHEDTKQQLKSDCEKEIEEVVAQLRGKYDAKLQDVEATFV 536

Query: 162 QKMEDHRTNLQYVYLSKLLAETLMLKHQDYKGAVPPDTRQ 201
            K  +   N + V ++K+LA+    K  D K +  P  +Q
Sbjct: 537 LKKMELDINQKKVTMNKILADAFRSKCMDVKASGAPGVQQ 576