Jatropha Genome Database

JcCA0020851.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020851.20 - phase: 0 
         (166 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018604001 assembled CDS                                        55   1e-08
GSVIVT01018606001 assembled CDS                                        55   2e-08
GSVIVT01035108001 assembled CDS                                        52   1e-07
GSVIVT01018608001 assembled CDS                                        51   2e-07
GSVIVT01018607001 assembled CDS                                        51   2e-07
GSVIVT01031165001 assembled CDS                                        50   4e-07

>GSVIVT01018604001 assembled CDS
          Length = 187

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 20/153 (13%)

Query: 5   IFFFALFFAMISTSHQA-----SELLNQSCDKTLYKDFCKEALGSAPASDMQS----LTK 55
           +  FA  F  IS +  A     +E +  SC  T+Y   C  +L SA A+ +Q+    L  
Sbjct: 15  LILFAFHFNSISAAGPAARKDNTEFIRTSCGTTIYPRLCFTSL-SAHANVIQTSPRLLAD 73

Query: 56  SALDIASLSANEVLKLIPKLLETSSDASVKQ--ALTDCSEVYQSALDQIKKSTAAVD--- 110
           +AL +   +A     ++  LL  S     ++  A+ DC E    ++DQ++K+   ++   
Sbjct: 74  TALSVTLSTARSTSSVMSNLL-LSHGLKPREVVAMKDCVEELSDSVDQLRKAMGEMNQIK 132

Query: 111 ----AKAYNDVNTWISAGMTSSETCEEGFNGVT 139
                   ND+ TW+SA +T  +TC +GF G T
Sbjct: 133 GSNFGLIMNDIQTWVSAALTYEDTCTDGFAGNT 165


>GSVIVT01018606001 assembled CDS
          Length = 201

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 21  ASELLNQSCDKTLYKDFCKEALGSAPASDMQS----LTKSALDIASLSANEVLKLIPKLL 76
           ++E +  SC  T Y   C  +L SA AS +Q+    L  +AL +   +A     L+ K++
Sbjct: 37  STEFIRTSCGTTTYPKLCYTSL-SAHASVIQTSPKLLADTALAVTLSTARSTSSLMSKMV 95

Query: 77  ETSS-DASVKQALTDCSEVYQSALDQIKKSTAAVD-------AKAYNDVNTWISAGMTSS 128
           ++         A+ DC E    ++DQ++K+   +            ND+ TW+SA +T  
Sbjct: 96  QSHGLKPREVAAMHDCVEELSDSVDQLRKAMGEMTQIKGSNFGLMMNDIQTWVSAALTDE 155

Query: 129 ETCEEGFNG 137
           +TC +GF G
Sbjct: 156 DTCTDGFAG 164


>GSVIVT01035108001 assembled CDS
          Length = 1281

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 14/136 (10%)

Query: 15  ISTSHQASELLNQSCDKTLYKDFCKEALGSAPA--SDMQSLTKSALDIASLSANEVLKLI 72
           ISTS +A + +   C  T YK+ C  +L SA A  SD + L ++A  +A    +  L+  
Sbjct: 40  ISTSVKAIQAI---CQPTDYKEACVNSLTSAKANTSDPKELVRTAFQVAINQISSALQNS 96

Query: 73  PKLLETSSDASVKQALTDCSEVYQSALDQIKKS--------TAAVDAKAYNDVNTWISAG 124
             L +   D   K AL +C E+   A+D ++ S         + +D     D+  W+S  
Sbjct: 97  TTLRDLEKDPRTKGALENCHELMDYAIDDLRNSFNKLGVFDISKID-DYVEDLKIWLSGA 155

Query: 125 MTSSETCEEGFNGVTS 140
           +T  ETC +GF   T 
Sbjct: 156 LTYQETCLDGFENTTG 171


>GSVIVT01018608001 assembled CDS
          Length = 202

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 21  ASELLNQSCDKTLYKDFCKEALGSAPASDMQS----LTKSALDIASLSANEVLKLIPKLL 76
           ++E +  SC  T Y   C  +L SA AS +Q+    L  +AL +   +A     L+ K++
Sbjct: 38  STEFIRTSCGTTTYPRLCYTSL-SAHASVIQTSPKLLADTALAVTLSTARSTSSLMSKMV 96

Query: 77  ETSS-DASVKQALTDCSEVYQSALDQIKKSTAAV-DAKAYN------DVNTWISAGMTSS 128
           ++         A+ DC E    ++DQ++++   +   K  N      D+ TW+S  +T  
Sbjct: 97  QSHGLKPREVAAMHDCVEELSDSVDQLRRAMGEMTQIKGSNFGLMMDDIQTWVSTALTDE 156

Query: 129 ETCEEGFNG 137
           +TC +GF G
Sbjct: 157 DTCTDGFAG 165


>GSVIVT01018607001 assembled CDS
          Length = 202

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 21  ASELLNQSCDKTLYKDFCKEALGSAPASDMQS----LTKSALDIASLSANEVLKLIPKLL 76
           ++E +  SC  T Y   C  +L SA AS +Q+    L  +AL +   +A     L+ K++
Sbjct: 38  STEFIRTSCGTTTYPRLCYTSL-SAHASVIQTSPKLLADTALAVTLSTARSTSSLMSKMV 96

Query: 77  ETSS-DASVKQALTDCSEVYQSALDQIKKSTAAV-DAKAYN------DVNTWISAGMTSS 128
           ++         A+ DC E    ++DQ++++   +   K  N      D+ TW+S  +T  
Sbjct: 97  QSHGLKPREVAAMHDCVEELSDSVDQLRRAMGEMTQIKGSNFGLMMDDIQTWVSTALTDE 156

Query: 129 ETCEEGFNG 137
           +TC +GF G
Sbjct: 157 DTCTDGFAG 165


>GSVIVT01031165001 assembled CDS
          Length = 769

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 22/140 (15%)

Query: 15  ISTSHQASELLNQSCDKTLYKDFCKEALGSA------PASDMQSLTKSALDIASLSA-NE 67
           IS+S +A + +   C  T YKD C  +L S       P   +Q+   SA++  S +A N 
Sbjct: 52  ISSSMKAIQAI---CQPTDYKDACVNSLTSKAGNTTDPKDLVQAAFASAMEHLSAAAKNS 108

Query: 68  VLKLIPKLLETSSDASVKQALTDCSEVYQSALDQIKKSTAAVDAKAYN-------DVNTW 120
            L     L E + D    QAL +C ++   A+D +KKS   V    Y+       D+  W
Sbjct: 109 TL-----LQELNKDPRASQALQNCEDLVNYAIDDLKKSFNQVGDFDYSKMDNIIADIKIW 163

Query: 121 ISAGMTSSETCEEGFNGVTS 140
           +SA +T  ETC +GF   T 
Sbjct: 164 LSAVITYQETCLDGFENTTG 183