Jatropha Genome Database

JcCA0020831.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020831.40 + phase: 2 /TE
         (1057 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                       143   5e-34
GSVIVT01012583001 assembled CDS                                        74   3e-13
GSVIVT01032526001 assembled CDS                                        69   9e-12
GSVIVT01020170001 assembled CDS                                        66   1e-10

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score =  143 bits (360), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 142/289 (49%), Gaps = 7/289 (2%)

Query: 173  NAGATYQRMATTIFHDMIHKEVEVYVDDMVVKSKTAEEHTTALEKFFLRL*KYNLKLNPA 232
            N  A +  +   +F   + + V V+VDD+++ S++ EEH   L      L ++ L     
Sbjct: 972  NVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLD 1031

Query: 233  KCLFGATSGVFLRHMVSRKGIEIDPSKAKAILEMPAPKSKKEVRGFLGRLQYISRFINQL 292
            K  F  T   FL H+VS  GI +D SK +A+ E   P +  EVR FLG   Y  RF+   
Sbjct: 1032 KSEFWLTEVNFLGHVVSEAGIAVDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVEDF 1091

Query: 293  ADTCGPIFKLLRKGVAIKWNEDCQKAFDRVKQYLLSPPILQPPRLGKPLLLYLSVTEEAM 352
            +    P+ +L RKGV   WNE+C+ AF  +K+ L + P+L  P  G+   +Y   +   +
Sbjct: 1092 SRIAAPMTRLTRKGVKFDWNEECENAFQELKRKLTTAPVLTAPISGELFTIYCDASTVGL 1151

Query: 353  GAMLAQQAEDTRVENVVYYLSKRMLDYELKYNKIEKLCLALVWACTKLQHYLSSYTTYVI 412
            G +L QQ +      VV Y S+++  +E  Y   +    A+V+A    +HYL      V 
Sbjct: 1152 GCVLMQQGK------VVAYASRQLKQHERNYPAHDLELAAVVFALKTWRHYLYGEKFEVY 1205

Query: 413  SESNPLKFLMERPVLDSKMAKWVSVLAAYGLKFVQRKAVKGGALADQLA 461
            S+   LK++  +  L+S+  +W+  L  Y    +  +  K   +AD L+
Sbjct: 1206 SDHKSLKYIFTQKDLNSRQRRWMETLEDYDFA-LHYQPGKANVVADALS 1253


>GSVIVT01012583001 assembled CDS
          Length = 96

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 2/96 (2%)

Query: 778 IDVIGKVHPKASNGHQFILVAVDYFTKWIEATSYSVLNAKKAAQFVRTNILCRYGTPFEI 837
           +D++G + P A    +F+L+A DYF+KW+EA +Y+ +  K   +F+  NI+ R+G P EI
Sbjct: 1   MDIVGPL-PTAGAQKKFLLIATDYFSKWVEAEAYANIKDKDITKFIWKNIIYRFGIPQEI 59

Query: 838 VTDNGSHFQS-EFSDLLKQKKIQHHKSSPYRPQTNG 872
           + DNG  F S  F     + KI++  S+P  P+  G
Sbjct: 60  IADNGLQFDSITFQTFYSELKIKNLYSTPRYPKAMG 95


>GSVIVT01032526001 assembled CDS
          Length = 287

 Score = 69.3 bits (168), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 68/143 (47%), Gaps = 4/143 (2%)

Query: 480 LSLESEVWEMYFDGAS--NYHGNGVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEACIKG 537
           +S     W + FDGAS  N    G G V +   G  +    +     TNN AEY A I G
Sbjct: 141 MSSNCHSWLLQFDGASKGNPGQAGAGAVLRADDGSAVIHLREGVGIATNNVAEYRALILG 200

Query: 538 LEAALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHYLPR 597
           ++ AL+KGIK ++  GDS L+  Q    WK K + +        EL ++F      ++ R
Sbjct: 201 MKYALKKGIKRIRARGDSQLVCMQFQGLWKTKNQNMADLCEEAKELGKKFLSFQIEHVLR 260

Query: 598 AKNQFADALATLASMVNVGGDQV 620
             N  ADA A LA  VN+   QV
Sbjct: 261 EFNSEADAQANLA--VNLTNGQV 281


>GSVIVT01020170001 assembled CDS
          Length = 445

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 7/152 (4%)

Query: 491 FDGASNYHGN----GVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEACIKGLEAALEKGI 546
           FDGAS   GN    G   V ++  G  I    +     TNN AEY+A I GL+ AL+KG 
Sbjct: 295 FDGASK--GNPGPAGAAAVLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGY 352

Query: 547 KILKVFGDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHYLPRAKNQFADAL 606
             ++V GDS L+  Q    WK + + +    +   +L  +F  +  +++ R  N  ADA 
Sbjct: 353 TSIRVQGDSKLVCMQVQGLWKARNKNMSILCKEAKKLKNEFLSVEINHVLRGLNSEADAQ 412

Query: 607 ATLASMVNVGGDQVIRPLTVRLQK-QSAYVMN 637
           A LA  + VG  Q +  L    Q  +  YV N
Sbjct: 413 ANLAVHLAVGEVQEVHGLVFVDQNLKGVYVYN 444