Jatropha Genome Database

JcCA0020831.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020831.30 - phase: 0 
         (452 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013403001 assembled CDS                                       739   0.0  
GSVIVT01032942001 assembled CDS                                       329   2e-90
GSVIVT01036751001 assembled CDS                                       293   2e-79
GSVIVT01001842001 assembled CDS                                       259   2e-69
GSVIVT01007521001 assembled CDS                                       259   2e-69
GSVIVT01010328001 assembled CDS                                       257   7e-69
GSVIVT01001128001 assembled CDS                                       244   6e-65

>GSVIVT01013403001 assembled CDS
          Length = 453

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/453 (80%), Positives = 392/453 (86%), Gaps = 1/453 (0%)

Query: 1   MATHAALAPSRIPAS-TRLPSKTTYSFPSQCSSKRLEVAEFSGLRATSHVSYAKNATEGS 59
           MA+HAALA SRIP + TR PSK ++SFP+Q  +KRLEVAEFSGLR+   V++AKNA E S
Sbjct: 1   MASHAALASSRIPTTNTRHPSKASHSFPTQFFAKRLEVAEFSGLRSGGCVTFAKNAREPS 60

Query: 60  FFDVVAAQMTPKVAASTPIRAETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVND 119
           FFDVVA+Q+TPK     P+R ETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL+VIVVND
Sbjct: 61  FFDVVASQLTPKAGGPAPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIVVND 120

Query: 120 SAGVKNAAHLLKYDSMLGTFKADVKIVDDSTISVDGKHIKVVSNRDPLKLPWAELGIDIV 179
           S GVKNA+HLLKYDSMLGTFKA+VKIVD+ TISVDGK IKVVS+RDPLKLPWAELGIDIV
Sbjct: 121 SGGVKNASHLLKYDSMLGTFKAEVKIVDNETISVDGKPIKVVSSRDPLKLPWAELGIDIV 180

Query: 180 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYSHQVANIVSNASC 239
           IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE DYSH+V+NIVSNASC
Sbjct: 181 IEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYSHEVSNIVSNASC 240

Query: 240 TTNCLAPFVKIIDEEFGIVKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGA 299
           TTNCLAPFVKI+DEE GIVKGTMTTTHSYTGDQ                  NIVPTSTGA
Sbjct: 241 TTNCLAPFVKILDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA 300

Query: 300 AKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAADGPLKG 359
           AKAVSLVLPQLKGKLNGIALR               EKKGITAEDVNAAFRKAADGPLKG
Sbjct: 301 AKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKG 360

Query: 360 ILDVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 419
           IL VCDVPLVSVDF+C+DVSSTID+SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA
Sbjct: 361 ILAVCDVPLVSVDFKCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 420

Query: 420 NEWPGVAATGSGDPLEEFCEKNPADEECKVYEA 452
            +WPG AA GSGDPLE+FC+ NPADEECKVYEA
Sbjct: 421 AKWPGFAAEGSGDPLEDFCKTNPADEECKVYEA 453


>GSVIVT01032942001 assembled CDS
          Length = 289

 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/236 (70%), Positives = 190/236 (80%), Gaps = 3/236 (1%)

Query: 38  AEFSGLRATSHVSYAKNATEGSFFDVVAAQMTPKVAASTPIR-AETVAKLKVAINGFGRI 96
           AEFSGLR +S        T   F  VVA Q +   + S   R   T AKLKVAINGFGRI
Sbjct: 21  AEFSGLRNSSACLSFNRKTSDDFLSVVAFQTSAVGSNSGGYRKGVTEAKLKVAINGFGRI 80

Query: 97  GRNFLRCWHGRKDSPLEVIVVNDSAGVKNAAHLLKYDSMLGTFKADVKIVDDSTISVDGK 156
           GRNFLRCWHGRKDSPL+VIVVND+ GVK A+HLLKYDS+LGTF+ADVK V D  ISVDGK
Sbjct: 81  GRNFLRCWHGRKDSPLDVIVVNDTGGVKQASHLLKYDSILGTFEADVKAVGDDAISVDGK 140

Query: 157 HIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPT 216
            IK+VS+R+PL LPW +L ID+VIEGTGVFVD  GAGKHIQAGAKKV+ITAP KG DIPT
Sbjct: 141 VIKIVSSRNPLDLPWGDLDIDLVIEGTGVFVDRDGAGKHIQAGAKKVLITAPGKG-DIPT 199

Query: 217 YVVGVNEKDYSHQVANIVSNASCTTNCLAPFVKIIDEEFGIVKGTMTTTHSYTGDQ 272
           YVVGVN  +Y+H   +I+SNASCTTNCLAPFVK++D++FGI+KGTMTTTHSYTGDQ
Sbjct: 200 YVVGVNADEYNHD-ESIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ 254


>GSVIVT01036751001 assembled CDS
          Length = 429

 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/337 (48%), Positives = 206/337 (61%), Gaps = 8/337 (2%)

Query: 85  KLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDS-AGVKNAAHLLKYDSMLGTFKADV 143
           + K+ INGFGRIGR  LR    R D  ++V+ VND     K  A++ KYDS  G FK  +
Sbjct: 93  QTKIGINGFGRIGRLVLRVATSRDD--IDVVAVNDPFVDAKYMAYMFKYDSTHGVFKGTI 150

Query: 144 KIVDDSTISVDGKHIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 203
           K++D+ST+ ++GK IKV S RDP ++PW + GID V+E +GVF     A  HI+ GAKKV
Sbjct: 151 KVLDESTLEINGKQIKVTSKRDPSEIPWGDYGIDYVVESSGVFTTTEKASAHIKGGAKKV 210

Query: 204 IITAPAKGADIPTYVVGVNEKDYSHQVANIVSNASCTTNCLAPFVKIIDEEFGIVKGTMT 263
           +I+AP+  AD P +VVGVNE  Y   + NIVSNASCTTNCLAP  K++ EEFGIV+G MT
Sbjct: 211 VISAPS--ADAPMFVVGVNETSYKPSM-NIVSNASCTTNCLAPLAKVVHEEFGIVEGLMT 267

Query: 264 TTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXX 322
           T H+ T  Q                   NI+P+STGAAKAV  VLP+L GKL G+A R  
Sbjct: 268 TVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVP 327

Query: 323 XXXXXXXXXXXXXEKKGITAEDVNAAFRKAADGPLKGILDVCDVPLVSVDFRCTDVSSTI 382
                         KK  T EDV AA + A++GPLKGIL   D  +VS DF     SS  
Sbjct: 328 TPNVSVVDLTCRL-KKSATYEDVKAAVKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIF 386

Query: 383 DSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 419
           D+   + +    +K+VAWYDNEWGYS RV+DL   +A
Sbjct: 387 DAKAGIGLSASFMKLVAWYDNEWGYSNRVLDLIEHMA 423


>GSVIVT01001842001 assembled CDS
          Length = 337

 Score =  259 bits (663), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/335 (43%), Positives = 199/335 (59%), Gaps = 9/335 (2%)

Query: 83  VAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDS-AGVKNAAHLLKYDSMLGTFKA 141
           +AK+K+ INGFGRIGR   R    R D  +E++ VND         ++ KYDS+ G +K 
Sbjct: 1   MAKIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFINTDYMTYMFKYDSVHGQWKH 58

Query: 142 -DVKIVDDSTISVDGKHIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 200
            D+K+ D  T+    K + V   ++P ++PW E G + V+E TGVF D   A  H++ GA
Sbjct: 59  HDIKVKDSKTLLFGDKAVTVFGAKNPEEIPWGEAGAEYVVESTGVFTDKDKAALHLKGGA 118

Query: 201 KKVIITAPAKGADIPTYVVGVNEKDYSHQVANIVSNASCTTNCLAPFVKIIDEEFGIVKG 260
           KKVII+AP+  A  P +V+GVNEK+Y   + +IVSNASCTTNCLAP  K+I ++FGIV+G
Sbjct: 119 KKVIISAPSSNA--PMFVMGVNEKEYKSNI-DIVSNASCTTNCLAPLAKVIHDKFGIVEG 175

Query: 261 TMTTTHSYTGDQXXXXX-XXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIAL 319
            MTT HS T  Q                   NI+P+STGAAKAV  VLP L GKL G+A 
Sbjct: 176 LMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAF 235

Query: 320 RXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAADGPLKGILDVCDVPLVSVDFRCTDVS 379
           R               EKK  + +D+ AA +  ++G LKGIL   +  +VS DF     S
Sbjct: 236 RVPTADVSVVDLTVRTEKKA-SYDDIKAAIKAESEGNLKGILGYTEDEVVSSDFLGDSRS 294

Query: 380 STIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 414
           S  D+   + + ++ +K+V+WYDNEWGYS RVVDL
Sbjct: 295 SIFDAKAGIALNENFIKLVSWYDNEWGYSSRVVDL 329


>GSVIVT01007521001 assembled CDS
          Length = 343

 Score =  259 bits (662), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/339 (43%), Positives = 202/339 (59%), Gaps = 9/339 (2%)

Query: 79  RAETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSAGVKN-AAHLLKYDSMLG 137
           +  +  K+K+ INGFGRIGR   R    R D  +E++ VND     +   ++ KYDS+ G
Sbjct: 3   KCSSFRKIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFITTDYMTYMFKYDSVHG 60

Query: 138 TFKA-DVKIVDDSTISVDGKHIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHI 196
            +K  ++K+ D +T+    K + V   R+P ++PW E G + V+E TGVF D   A  H+
Sbjct: 61  QWKHHELKVKDSNTLLFGEKPVTVFGIRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHL 120

Query: 197 QAGAKKVIITAPAKGADIPTYVVGVNEKDYSHQVANIVSNASCTTNCLAPFVKIIDEEFG 256
           + GAKKV+I+AP+K  D P +VVGVNEK+Y  ++ +IVSNASCTTNCLAP  K+I++ FG
Sbjct: 121 KGGAKKVVISAPSK--DAPMFVVGVNEKEYKPEL-HIVSNASCTTNCLAPLAKVINDRFG 177

Query: 257 IVKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLN 315
           IV+G MTT HS T  Q                   NI+P+STGAAKAV  VLP L GKL 
Sbjct: 178 IVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLT 237

Query: 316 GIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAADGPLKGILDVCDVPLVSVDFRC 375
           G+A R               EK   T E V AA ++ ++G +KGIL   +  +VS DF  
Sbjct: 238 GMAFRVPTVDVSVVDLTVRLEKAA-TYEQVKAAIKEESEGKMKGILGYTEDDVVSTDFIG 296

Query: 376 TDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 414
            + SS  D+   + + +  +K+VAWYDNEWGYS RV+DL
Sbjct: 297 DNRSSIFDAKAGIALNEKFLKIVAWYDNEWGYSSRVIDL 335


>GSVIVT01010328001 assembled CDS
          Length = 380

 Score =  257 bits (657), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 147/339 (43%), Positives = 202/339 (59%), Gaps = 9/339 (2%)

Query: 85  KLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSAGVKN-AAHLLKYDSMLGTFKA-D 142
           K+K+ INGFGRIGR   R     + + +E++ VND     +   ++ KYDS+ G +K  D
Sbjct: 47  KIKIGINGFGRIGRLVARV--ALQSNDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHHD 104

Query: 143 VKIVDDSTISVDGKHIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 202
           VK+ D  T+    K + V   R+P ++PWAE G D V+E TGVF D   A  H++ GAKK
Sbjct: 105 VKVKDSKTLLFGEKSVTVFGVRNPEEIPWAETGADYVVESTGVFTDKDKAAAHLKGGAKK 164

Query: 203 VIITAPAKGADIPTYVVGVNEKDYSHQVANIVSNASCTTNCLAPFVKIIDEEFGIVKGTM 262
           VII+AP+K  D P +V+GVNEK+Y   + +IVSNASCTTNCLAP  K+I++ FGIV+G M
Sbjct: 165 VIISAPSK--DAPMFVMGVNEKEYKPDI-DIVSNASCTTNCLAPLAKVINDRFGIVEGLM 221

Query: 263 TTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRX 321
           TT H+ T  Q                   NI+P+STGAAKAV  VLP L GKL G++ R 
Sbjct: 222 TTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 281

Query: 322 XXXXXXXXXXXXXXEKKGITAEDVNAAFRKAADGPLKGILDVCDVPLVSVDFRCTDVSST 381
                         EK   T ++V AA ++ ++G LKGIL   +  +VS DF     SS 
Sbjct: 282 PTVDVSVVDLTVRLEKSA-TYDEVKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSI 340

Query: 382 IDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAN 420
            D+   + +  + +K+V+WYDNEWGYS RV+DL   +A+
Sbjct: 341 FDAKAGIALNANFLKLVSWYDNEWGYSSRVIDLIRHMAS 379


>GSVIVT01001128001 assembled CDS
          Length = 331

 Score =  244 bits (623), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 146/236 (61%), Positives = 163/236 (69%), Gaps = 16/236 (6%)

Query: 185 VFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYSHQVANIVSNASCTTNCL 244
           VFVD  GAGKHI+AGAKKV+ITAP K ADIPTYVVGVN + Y +    I+SNASCTTNCL
Sbjct: 109 VFVDREGAGKHIEAGAKKVLITAPGK-ADIPTYVVGVNAETY-NPAEPIISNASCTTNCL 166

Query: 245 APFVKIIDEEFGIVKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVS 304
           APFVKI+D++FGI+KGTMTTTHSYTGDQ                  NIVPTSTGAAKAV+
Sbjct: 167 APFVKILDQKFGIIKGTMTTTHSYTGDQRLFDASHRVLRPVRAAVLNIVPTSTGAAKAVA 226

Query: 305 LVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAADGPLKGILDVC 364
           LVLP LKGKLNGIALR                     AE+VNAAFR +A+  L GI  +C
Sbjct: 227 LVLPNLKGKLNGIALRVPTSNVSVVDLVVLVNDGETFAEEVNAAFRNSAEKELNGIPSMC 286

Query: 365 DVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAN 420
           D PLVSVDFRC+DVSST+DSSLTMVMGDDMVK              VVDLA +VAN
Sbjct: 287 DEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVK--------------VVDLADIVAN 328