Jatropha Genome Database

JcCA0020761.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020761.20 - phase: 0 
         (250 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030864001 assembled CDS                                        50   1e-06

>GSVIVT01030864001 assembled CDS
          Length = 183

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 192 LKMAQSSSNQETSEREDR---GGEQQELCKKRILMGEKCRPLSYSGTLQYDKDGTLLPDA 248
           +KM      Q   E  D    G + + + K+ I+MGE+CRPL +SG + YD  G LLP++
Sbjct: 109 VKMVSWRKVQVEGEEGDYNSDGDDDEAVWKRTIMMGERCRPLDFSGKIAYDSQGNLLPNS 168