Jatropha Genome Database

JcCA0020601.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020601.30 - phase: 0 /partial
         (149 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035161001 assembled CDS                                       236   3e-63
GSVIVT01029831001 assembled CDS                                       187   1e-48
GSVIVT01012136001 assembled CDS                                        75   1e-14
GSVIVT01015855001 assembled CDS                                        70   4e-13

>GSVIVT01035161001 assembled CDS
          Length = 362

 Score =  236 bits (603), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/129 (86%), Positives = 119/129 (92%)

Query: 1   ILRCARQLGDFLLVGIHTDQIVSEHRGKNYPIMHLHERSLSVLACRYVDEVIIGAPWEVS 60
           IL+ ARQLGDFLLVGIHTDQ VSEHRG +YPIMHLHERSLSVLACRYVDEVIIGAPW+V+
Sbjct: 214 ILKNARQLGDFLLVGIHTDQTVSEHRGAHYPIMHLHERSLSVLACRYVDEVIIGAPWDVT 273

Query: 61  KDMITTFNISLVVHGTIAECNSLLAGIPDPYAVPKSMGIFQILESPKNITTTSVAQRIVA 120
           KDMITTFNISLVVHGT+AE NS L G  DPY VPKSMGIF +LESPK+ITTTSVAQRI+A
Sbjct: 274 KDMITTFNISLVVHGTVAESNSFLNGARDPYEVPKSMGIFHMLESPKDITTTSVAQRIIA 333

Query: 121 NHEAYMKRN 129
           NHEAYMKRN
Sbjct: 334 NHEAYMKRN 342



 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 72/123 (58%), Gaps = 9/123 (7%)

Query: 2   LRCARQLGDFLLVGIHTDQIVSEHRGKNYPIMHLHERSLSVLACRYVDEVIIGAPWEVSK 61
           LR A+ LGD L+VG+ +D+ +  ++G   P++ + ER + V   ++VDEVI  AP+ +++
Sbjct: 16  LRQAKALGDELVVGVVSDEEIIANKGP--PVLSMEERLVLVSGLKWVDEVIANAPYAITE 73

Query: 62  D-MITTFN---ISLVVHGTIAECNSLLAGIPDPYAVPKSMGIFQILESPKNITTTSVAQR 117
             M T FN   I  ++HG   +   LL    D YA+ K  G ++ ++  + +++T +  R
Sbjct: 74  QFMDTLFNEHKIDYIIHG---DDPCLLPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGR 130

Query: 118 IVA 120
           I++
Sbjct: 131 ILS 133


>GSVIVT01029831001 assembled CDS
          Length = 362

 Score =  187 bits (476), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/129 (75%), Positives = 112/129 (86%)

Query: 1   ILRCARQLGDFLLVGIHTDQIVSEHRGKNYPIMHLHERSLSVLACRYVDEVIIGAPWEVS 60
           IL+ AR LGDFLLVGIHTDQ VS +RG + PIM+LHERSLSVLACRYVDEVIIGAPWEVS
Sbjct: 214 ILKLARGLGDFLLVGIHTDQTVSANRGAHRPIMNLHERSLSVLACRYVDEVIIGAPWEVS 273

Query: 61  KDMITTFNISLVVHGTIAECNSLLAGIPDPYAVPKSMGIFQILESPKNITTTSVAQRIVA 120
           KDMITTFNISLVVHGT+AE N+   G  DPYA+P S+GI++ LESP +ITTT++ +RIV+
Sbjct: 274 KDMITTFNISLVVHGTVAEYNNFPKGKEDPYAIPISLGIYEQLESPLDITTTTIIRRIVS 333

Query: 121 NHEAYMKRN 129
           NHEAY KRN
Sbjct: 334 NHEAYQKRN 342



 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 71/122 (58%), Gaps = 9/122 (7%)

Query: 2   LRCARQLGDFLLVGIHTDQIVSEHRGKNYPIMHLHERSLSVLACRYVDEVIIGAPWEVSK 61
           LR AR LGD L+VG+ +D  ++ ++G   P+  L+ER + V   ++VDEVI  AP+ +++
Sbjct: 16  LRQARALGDQLVVGVVSDAEITANKGP--PVTPLNERMIMVSGVKWVDEVIPDAPYAITE 73

Query: 62  D----MITTFNISLVVHGTIAECNSLLAGIPDPYAVPKSMGIFQILESPKNITTTSVAQR 117
           D    +   +NI  ++HG   +   +L    D YA+ K  G ++ ++  + +++T +  R
Sbjct: 74  DFMKKLFDEYNIDYIIHG---DDPCILPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGR 130

Query: 118 IV 119
           ++
Sbjct: 131 ML 132


>GSVIVT01012136001 assembled CDS
          Length = 289

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 11  FLLVGIHTDQIVSEHRGKNYPIMHLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNIS 70
           +LLVG   D++  +++GK   +M   ER  S+  CR+VDEVI  APW ++++ I    I 
Sbjct: 41  YLLVGCCNDEVTHKYKGKT--VMTGSERYESLRHCRWVDEVIPDAPWVLTQEFIDKHEID 98

Query: 71  LVVHGTIAECNSLLAGIPDPYAVPKSMGIFQILESPKNITTTSVAQRIVANHEAYMKRN 129
            V H ++   ++  AG  D Y   KS+G F+  +    I+T+ +  RIV ++  Y+ RN
Sbjct: 99  YVAHDSLPYADASGAG-KDVYEFVKSIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRN 156


>GSVIVT01015855001 assembled CDS
          Length = 305

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 11  FLLVGIHTDQIVSEHRGKNYPIMHLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNIS 70
           +LLVG   D+   + +GK   +M+  ER  S+  C++VDEVI  APW ++++ +    I 
Sbjct: 57  YLLVGCCNDETTHKFKGK--TVMNEVERYESLRHCKWVDEVIPDAPWVLTQEFLDKHKID 114

Query: 71  LVVHGTIAECNSLLAGIPDPYAVPKSMGIFQILESPKNITTTSVAQRIVANHEAYMKRN 129
            V H ++   ++  AG  D Y   KS+G F+  +    I+T+ +  RIV ++  Y+ RN
Sbjct: 115 YVAHDSLPYADASGAG-NDVYEFVKSIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRN 172