Jatropha Genome Database

JcCA0020601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020601.20 + phase: 0 
         (228 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035163001 assembled CDS                                       116   7e-27

>GSVIVT01035163001 assembled CDS
          Length = 234

 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 111/238 (46%), Gaps = 17/238 (7%)

Query: 3   GQYLSSIKMKRKEXXXXXXXXXXXXXXXPARKIRRLDXXXXXXXXXXXXXXXXXXVFVGG 62
             YLS +KMKRKE               PARKIRRLD                   F   
Sbjct: 2   ASYLS-LKMKRKELEEVNDDFSDFSLSSPARKIRRLDAELPPIMEEEEHDVPVE--FEQL 58

Query: 63  VEEKQ----QPMVDSGVGNQERAIVVFKPVKTNPXXXXXXXXXXXXXXXXXYGIKSQF-- 116
           + EKQ    +  VD    N ERAIV+FKPV + P                  G K++F  
Sbjct: 59  LPEKQVENTREEVDGIPLNAERAIVLFKPVNS-PLMQSPSKFSVSVDSDIISGFKNKFPW 117

Query: 117 -----LRSSCNGNIRLAEEEREATNECMAVVPWVPSQAAFARGIDTSQAEAPDLMEAEQV 171
                LR S        E     TNEC+AVVPWVPS    A G+   Q EA +LME  + 
Sbjct: 118 SSQPNLRKSVEDETASGERNIRVTNECLAVVPWVPSHLPQASGVKVPQIEAVELMEEAEE 177

Query: 172 GEE-TMEIEFEGNNTIQSNELESGGMMSGTQGLPQWQQQHCLIPQLPQNTSTPITWFQ 228
            E  TM+IE    N  Q  E   GG M G++ L QWQQQHC+ PQLPQN STPITWF+
Sbjct: 178 MEVTTMDIEDNNLNPEQQQEHGFGG-MRGSESLHQWQQQHCMTPQLPQNMSTPITWFR 234