Jatropha Genome Database

JcCA0020601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020601.10 - phase: 0 /partial
         (78 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035172001 assembled CDS                                       114   7e-27

>GSVIVT01035172001 assembled CDS
          Length = 436

 Score =  114 bits (286), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 49/63 (77%), Positives = 60/63 (95%)

Query: 16 QLNRIRKVVSAMAGRSPEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINRGILLGFIPSG 75
          +L+R+RKVV+ MAGR+ +EVRVVVSPYRICPLGAHIDHQGG VSA+T+N+GILLGFIPSG
Sbjct: 11 ELDRVRKVVAEMAGRNSKEVRVVVSPYRICPLGAHIDHQGGVVSAVTVNKGILLGFIPSG 70

Query: 76 DTK 78
          D++
Sbjct: 71 DSQ 73