Jatropha Genome Database

JcCA0020581.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020581.20 + phase: 2 /TE
         (950 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                       139   9e-33
GSVIVT01032526001 assembled CDS                                        64   3e-10
GSVIVT01020170001 assembled CDS                                        56   7e-08

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score =  139 bits (349), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 132/264 (50%), Gaps = 7/264 (2%)

Query: 91   VDDMVVKSKTAEEHTTALEKFFLRLRKYNLKLNPVKCLFGATSGVFLRHMVSRKGIEIDP 150
            VDD+++ S++ EEH   L      LR++ L     K  F  T   FL H+VS  GI +D 
Sbjct: 997  VDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLDKSEFWLTEVNFLGHVVSEAGIAVDH 1056

Query: 151  SKAKAILEMPAPKTEKEVRGFLGRLQYISRFINQLADTCGPIFKLLRKGVAIKWNEDCQK 210
            SK +A+ E   P    EVR FLG   Y  RF+   +    P+ +L RKGV   WNE+C+ 
Sbjct: 1057 SKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVEDFSRIAAPMTRLTRKGVKFDWNEECEN 1116

Query: 211  AFDRVKQYLLSPPILQPPRLGKPLLLYLSVIEEAMGAMLAQQAEDTRVENVVYYLSKRML 270
            AF  +K+ L + P+L  P  G+   +Y       +G +L QQ +      VV Y S+++ 
Sbjct: 1117 AFQELKRKLTTAPVLTAPISGELFTIYCDASTVGLGCVLMQQGK------VVAYASRQLK 1170

Query: 271  DYELKYNKIEKLCLALVWACKKLQHYLSSYTTYVIFESNPLKFLMERPTLDSKMAKWVSV 330
             +E  Y   +    A+V+A K  +HYL      V  +   LK++  +  L+S+  +W+  
Sbjct: 1171 QHERNYPAHDLELAAVVFALKTWRHYLYGEKFEVYSDHKSLKYIFTQKDLNSRQRRWMET 1230

Query: 331  LAAYDLKSVQRKAVKGGALADQLA 354
            L  YD  ++  +  K   +AD L+
Sbjct: 1231 LEDYDF-ALHYQPGKANVVADALS 1253


>GSVIVT01032526001 assembled CDS
          Length = 287

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 68/148 (45%), Gaps = 4/148 (2%)

Query: 368 LDEDLLSFESEVWEMYFDGAS--NYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYE 425
           ++   +S     W + FDGAS  N    G G V +   G  V    +     TNN AEY 
Sbjct: 136 IEAQAMSSNCHSWLLQFDGASKGNPGQAGAGAVLRADDGSAVIHLREGVGIATNNVAEYR 195

Query: 426 ACIKGLEAALEKGIKVLKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSF 485
           A I G++ AL+KGIK ++   DS L+  Q    WK K + +        EL + F     
Sbjct: 196 ALILGMKYALKKGIKRIRARGDSQLVCMQFQGLWKTKNQNMADLCEEAKELGKKFLSFQI 255

Query: 486 HYLPRAKNQFADALATLASMVNIGGDQV 513
            ++ R  N  ADA A LA  VN+   QV
Sbjct: 256 EHVLREFNSEADAQANLA--VNLTNGQV 281


>GSVIVT01020170001 assembled CDS
          Length = 445

 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 384 FDGASNYHGN----GVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLEAALEKGI 439
           FDGAS   GN    G   V ++  G  +    +     TNN AEY+A I GL+ AL+KG 
Sbjct: 295 FDGASK--GNPGPAGAAAVLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGY 352

Query: 440 KVLKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYLPRAKNQFADAL 499
             ++V  DS L+  Q    WK + + +        +L   F  +  +++ R  N  ADA 
Sbjct: 353 TSIRVQGDSKLVCMQVQGLWKARNKNMSILCKEAKKLKNEFLSVEINHVLRGLNSEADAQ 412

Query: 500 ATLASMVNIGGDQVIRPLT 518
           A LA  + +G  Q +  L 
Sbjct: 413 ANLAVHLAVGEVQEVHGLV 431