Jatropha Genome Database

JcCA0020521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020521.10 + phase: 0 
         (339 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004001001 assembled CDS                                       442   e-124
GSVIVT01038211001 assembled CDS                                       437   e-123
GSVIVT01004281001 assembled CDS                                       236   9e-63

>GSVIVT01004001001 assembled CDS
          Length = 432

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/338 (69%), Positives = 256/338 (75%)

Query: 1   MIQAEGVESLSETELHQACRERGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAF 60
           MIQAEGVESLSE ELHQACR+RGLLGLLSVEEMRQQLRDWLDLSLNH+VPSSLLILSRAF
Sbjct: 94  MIQAEGVESLSEAELHQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHAVPSSLLILSRAF 153

Query: 61  SVSGKVKPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKLXXXXXXXXXXXXXXX 120
           +VSGKVKPEEAVQATLSSLPDEVVDTVGVT LPSEDSVSERRRKL               
Sbjct: 154 TVSGKVKPEEAVQATLSSLPDEVVDTVGVTTLPSEDSVSERRRKLEFLEMQEELIKEEEE 213

Query: 121 XXXXXXXXXXXSVGSQKDVALEEMTLPTAREAQEQARAKTLEKHEQLCXXXXXXXXXXXX 180
                      S  +QKDVALEEMT+PTAREAQEQA AKTLEK +Q+C            
Sbjct: 214 KEEEVQARIKESTVNQKDVALEEMTIPTAREAQEQAEAKTLEKQQQICELSRALVVLASA 273

Query: 181 XXXXXXXXXFLKLVKKEIDLYNSMVDKEGTXXXXXXXXXXXXXXXXSDQAAETAISDKVS 240
                    FL+LV KEI+LYN MV+KEGT                SD A E A++DK S
Sbjct: 274 SSVSWEREAFLRLVNKEIELYNHMVEKEGTEDEEEAREAYRAARKDSDHAVEMAVADKAS 333

Query: 241 SALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVASAAMYLKDHLDKEG 300
           SALI+RVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVASA MYLKD L K+G
Sbjct: 334 SALIDRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVASATMYLKDTLGKDG 393

Query: 301 IQELISNLSKDREGKILVEDIVKLGSQMEDDDTAEEGK 338
           IQELISNLSKD+EGKI VEDI+KLGS+ EDD++ E G+
Sbjct: 394 IQELISNLSKDKEGKIRVEDIIKLGSEREDDNSDEPGR 431


>GSVIVT01038211001 assembled CDS
          Length = 764

 Score =  437 bits (1124), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/337 (67%), Positives = 256/337 (75%)

Query: 1   MIQAEGVESLSETELHQACRERGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAF 60
           +IQAEGVESLSE EL + CRERG+LGL SVEEMRQQLRDWLDLSLNHSVPSSLLILSRAF
Sbjct: 426 LIQAEGVESLSEAELREDCRERGMLGLRSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAF 485

Query: 61  SVSGKVKPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKLXXXXXXXXXXXXXXX 120
           +VSGKV+PEEAVQATLSSLPDEVVDTVG+TALPSEDSVSERRRKL               
Sbjct: 486 TVSGKVRPEEAVQATLSSLPDEVVDTVGITALPSEDSVSERRRKLEYLEMQEELIKEEEE 545

Query: 121 XXXXXXXXXXXSVGSQKDVALEEMTLPTAREAQEQARAKTLEKHEQLCXXXXXXXXXXXX 180
                      +V SQ+D+AL+EMT+PTAREAQEQARA+ +EK EQLC            
Sbjct: 546 KEEEEQAKIKETVVSQEDLALKEMTIPTAREAQEQARARAVEKQEQLCELSRALAVLASA 605

Query: 181 XXXXXXXXXFLKLVKKEIDLYNSMVDKEGTXXXXXXXXXXXXXXXXSDQAAETAISDKVS 240
                    FL+LV KEI+LYNSMV+KEGT                SD AA+ A+ D+VS
Sbjct: 606 SSVSREREEFLRLVNKEIELYNSMVEKEGTDGEKEAMEAYRAARDESDHAAKVAVGDEVS 665

Query: 241 SALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVASAAMYLKDHLDKEG 300
           SALI+RVDAMLQ LEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVA+AA+YLKD L KEG
Sbjct: 666 SALIDRVDAMLQNLEKEIDDVDAKIGDRWRLLDRDYDGKVTPEEVAAAALYLKDTLGKEG 725

Query: 301 IQELISNLSKDREGKILVEDIVKLGSQMEDDDTAEEG 337
           IQELISNLSKD++GKI VEDIV+LGS+ ED +T+E G
Sbjct: 726 IQELISNLSKDKDGKIHVEDIVRLGSRNEDANTSEAG 762


>GSVIVT01004281001 assembled CDS
          Length = 196

 Score =  236 bits (603), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 127/195 (65%), Positives = 143/195 (73%)

Query: 144 MTLPTAREAQEQARAKTLEKHEQLCXXXXXXXXXXXXXXXXXXXXXFLKLVKKEIDLYNS 203
           MT+PTAREAQEQA AKTLEK +Q+C                     FL+LV KEI+LYN 
Sbjct: 1   MTIPTAREAQEQAEAKTLEKQQQICELSRALVVLASASSVSWEREAFLRLVNKEIELYNH 60

Query: 204 MVDKEGTXXXXXXXXXXXXXXXXSDQAAETAISDKVSSALINRVDAMLQKLEKEIDDVDA 263
           MV+KEGT                SD A E A++DK SSALI+RVDAMLQKLEKEIDDVDA
Sbjct: 61  MVEKEGTEDEEEAREAYRSARKDSDHAVEMAVADKASSALIDRVDAMLQKLEKEIDDVDA 120

Query: 264 KIGDRWRLLDRDYDGKVTPEEVASAAMYLKDHLDKEGIQELISNLSKDREGKILVEDIVK 323
           KIGDRWRLLDRDYDGKVTPEEVASA MYLKD L K+GIQELISNLSKD+EGKI VEDI+K
Sbjct: 121 KIGDRWRLLDRDYDGKVTPEEVASATMYLKDTLGKDGIQELISNLSKDKEGKIRVEDIIK 180

Query: 324 LGSQMEDDDTAEEGK 338
           LGS+ EDD++ E G+
Sbjct: 181 LGSEREDDNSDEPGR 195