Jatropha Genome Database

JcCA0020441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020441.10 - phase: 0 /partial
         (227 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011680001 assembled CDS                                       423   e-119

>GSVIVT01011680001 assembled CDS
          Length = 1550

 Score =  423 bits (1087), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/221 (90%), Positives = 214/221 (96%)

Query: 7    LAQLPPDFHMQLYMEASRIIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 66
            LAQLPPDFH QLY+EAS +IKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIG
Sbjct: 1330 LAQLPPDFHKQLYIEASCLIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 1389

Query: 67   NIVALLHSFFSNLPQEWLEGTHVIIKHLKPITSVAMLRIAFRIMGPLLPRLANAHSLFSK 126
            NIVALLH+FFSNLPQEWLEGTH+IIKHL+P+TSVAMLRIAFRIMGPLLPRL+NAHSLF+K
Sbjct: 1390 NIVALLHAFFSNLPQEWLEGTHLIIKHLRPVTSVAMLRIAFRIMGPLLPRLSNAHSLFNK 1449

Query: 127  TLSLLLNTMAEVFGRNSQPSTPVEASEITDLIDFLHHVIHYEGQGGPVQANSKPRPEVLA 186
            TLSLLLNTM +VFGRNSQP+TPVEASEI DLIDFLHH +HYEGQGGPVQA+SKPRPEVLA
Sbjct: 1450 TLSLLLNTMVDVFGRNSQPATPVEASEIADLIDFLHHAVHYEGQGGPVQASSKPRPEVLA 1509

Query: 187  LCGRAAENLRPDIQHLLSHLKPDTNSSIYAATHPKLVQNPS 227
            LCGRA+E+LRPDIQHLLSHLK D NSSIYAATHPKLVQNPS
Sbjct: 1510 LCGRASESLRPDIQHLLSHLKTDINSSIYAATHPKLVQNPS 1550